Schema apply to select refactor

[jperez999]

This PR refactors all the apply and apply_inverse calls and introduces the concept of excluding. We then propogate the use of those core functions across the schema where necessary, replacing several current APIs (i.e. remove_col, without).

[nvidia-merlin-bot]

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GitHub pull request #74 of commit ab760b1dad18b75edf61dc8788116751bc6427e5, no merge conflicts.
Running as SYSTEM
Setting status of ab760b1dad18b75edf61dc8788116751bc6427e5 to PENDING with url https://10.20.13.93:8080/job/merlin_core/35/console and message: 'Pending'
Using context: Jenkins
Building on master in workspace /var/jenkins_home/workspace/merlin_core
using credential ce87ff3c-94f0-400a-8303-cb4acb4918b5
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/NVIDIA-Merlin/core # timeout=10
Fetching upstream changes from https://github.com/NVIDIA-Merlin/core
 > git --version # timeout=10
using GIT_ASKPASS to set credentials login for merlin-systems username and pass
 > git fetch --tags --force --progress -- https://github.com/NVIDIA-Merlin/core +refs/pull/74/*:refs/remotes/origin/pr/74/* # timeout=10
 > git rev-parse ab760b1dad18b75edf61dc8788116751bc6427e5^{commit} # timeout=10
Checking out Revision ab760b1dad18b75edf61dc8788116751bc6427e5 (detached)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f ab760b1dad18b75edf61dc8788116751bc6427e5 # timeout=10
Commit message: "fix merge conflicts"
 > git rev-list --no-walk c92d16b0fadfd4f885d0b43203d0d3c69feecd8d # timeout=10
[merlin_core] $ /bin/bash /tmp/jenkins4330360244769985268.sh
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Requirement already satisfied: setuptools in /usr/local/lib/python3.8/dist-packages (60.9.3)
Collecting setuptools
  Downloading setuptools-62.1.0-py3-none-any.whl (1.1 MB)
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 60.9.3
    Uninstalling setuptools-60.9.3:
      Successfully uninstalled setuptools-60.9.3
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
google-auth 1.35.0 requires cachetools<5.0,>=2.0.0, but you have cachetools 5.0.0 which is incompatible.
tensorflow-gpu 2.8.0 requires keras<2.9,>=2.8.0rc0, but you have keras 2.6.0 which is incompatible.
tensorflow-gpu 2.8.0 requires tensorboard<2.9,>=2.8, but you have tensorboard 2.6.0 which is incompatible.
Successfully installed setuptools-62.1.0
============================= test session starts ==============================
platform linux -- Python 3.8.10, pytest-7.1.1, pluggy-1.0.0
rootdir: /var/jenkins_home/workspace/merlin_core/core, configfile: pyproject.toml
plugins: xdist-2.5.0, forked-1.4.0, cov-3.0.0
collected 342 items / 1 skipped
tests/unit/core/test_dispatch.py ..                                      [  0%]

tests/unit/dag/test_base_operator.py ....                                [  1%]

tests/unit/dag/test_column_selector.py ..........................        [  9%]

tests/unit/dag/test_tags.py ......                                       [ 11%]

tests/unit/dag/ops/test_selection.py ...                                 [ 11%]

tests/unit/io/test_io.py ............................................... [ 25%]

................................................................         [ 44%]

tests/unit/schema/test_column_schemas.py ............................... [ 53%]

........................................................................ [ 74%]

.......................................................................  [ 95%]

tests/unit/schema/test_schema.py ......                                  [ 97%]

tests/unit/schema/test_schema_io.py ..                                   [ 97%]

tests/unit/utils/test_utils.py ........                                  [100%]
=============================== warnings summary ===============================

tests/unit/dag/test_base_operator.py: 4 warnings

tests/unit/io/test_io.py: 72 warnings

/usr/lib/python3.8/site-packages/cudf/core/dataframe.py:1253: UserWarning: The deep parameter is ignored and is only included for pandas compatibility.

warnings.warn(
tests/unit/io/test_io.py::test_validate_and_regenerate_dataset

/var/jenkins_home/workspace/merlin_core/core/merlin/io/parquet.py:551: DeprecationWarning: 'ParquetDataset.pieces' attribute is deprecated as of pyarrow 5.0.0 and will be removed in a future version. Specify 'use_legacy_dataset=False' while constructing the ParquetDataset, and then use the '.fragments' attribute instead.

paths = [p.path for p in pa_dataset.pieces]
tests/unit/utils/test_utils.py::test_nvt_distributed[True-True]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 44437 instead

warnings.warn(
tests/unit/utils/test_utils.py::test_nvt_distributed[True-False]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 40211 instead

warnings.warn(
tests/unit/utils/test_utils.py::test_nvt_distributed[False-True]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 40267 instead

warnings.warn(
tests/unit/utils/test_utils.py::test_nvt_distributed[False-False]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 34529 instead

warnings.warn(
tests/unit/utils/test_utils.py::test_nvt_distributed_force[True]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 45771 instead

warnings.warn(
tests/unit/utils/test_utils.py::test_nvt_distributed_force[False]

/var/jenkins_home/.local/lib/python3.8/site-packages/distributed/node.py:160: UserWarning: Port 8787 is already in use.

Perhaps you already have a cluster running?

Hosting the HTTP server on port 40009 instead

warnings.warn(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

================= 342 passed, 1 skipped, 83 warnings in 52.91s =================

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash

cd /var/jenkins_home/

CUDA_VISIBLE_DEVICES=1 python test_res_push.py "https://api.GitHub.com/repos/NVIDIA-Merlin/core/issues/$ghprbPullId/comments" "/var/jenkins_home/jobs/$JOB_NAME/builds/$BUILD_NUMBER/log"

[merlin_core] $ /bin/bash /tmp/jenkins6798601664391850537.sh

[github-actions]

Documentation preview

https://nvidia-merlin.github.io/core/review/pr-74