🐛[BUG]: Installation on Google Colab generates error #1144
Description
Version
1.2.0
On which installation method(s) does this occur?
No response
Describe the issue
Tried to install on google Colab with guidance from the forum, encounter this error all the time.
Collecting nvidia-physicsnemo
Downloading nvidia_physicsnemo-1.2.0-py3-none-any.whl.metadata (27 kB)
Requirement already satisfied: certifi>=2023.7.22 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (2025.8.3)
Requirement already satisfied: fsspec>=2023.1.0 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (2025.3.0)
Requirement already satisfied: numpy>=1.22.4 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (2.0.2)
Collecting onnx>=1.14.0 (from nvidia-physicsnemo)
Downloading onnx-1.19.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.0 kB)
Requirement already satisfied: packaging>=24.2 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (25.0)
Collecting s3fs>=2023.5.0 (from nvidia-physicsnemo)
Downloading s3fs-2025.9.0-py3-none-any.whl.metadata (1.4 kB)
Collecting setuptools>=77.0.3 (from nvidia-physicsnemo)
Downloading setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
Requirement already satisfied: timm>=0.9.12 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (1.0.20)
Requirement already satisfied: torch>=2.4.0 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (2.8.0+cu126)
Requirement already satisfied: tqdm>=4.60.0 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (4.67.1)
Collecting treelib>=1.2.5 (from nvidia-physicsnemo)
Downloading treelib-1.8.0-py3-none-any.whl.metadata (3.3 kB)
Requirement already satisfied: xarray>=2023.1.0 in /usr/local/lib/python3.12/dist-packages (from nvidia-physicsnemo) (2025.9.1)
Collecting zarr>=2.14.2 (from nvidia-physicsnemo)
Downloading zarr-3.1.3-py3-none-any.whl.metadata (10 kB)
Requirement already satisfied: protobuf>=4.25.1 in /usr/local/lib/python3.12/dist-packages (from onnx>=1.14.0->nvidia-physicsnemo) (5.29.5)
Requirement already satisfied: typing_extensions>=4.7.1 in /usr/local/lib/python3.12/dist-packages (from onnx>=1.14.0->nvidia-physicsnemo) (4.15.0)
Requirement already satisfied: ml_dtypes in /usr/local/lib/python3.12/dist-packages (from onnx>=1.14.0->nvidia-physicsnemo) (0.5.3)
Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs>=2023.5.0->nvidia-physicsnemo)
Downloading aiobotocore-2.24.2-py3-none-any.whl.metadata (25 kB)
Collecting fsspec>=2023.1.0 (from nvidia-physicsnemo)
Downloading fsspec-2025.9.0-py3-none-any.whl.metadata (10 kB)
Requirement already satisfied: aiohttp!=4.0.0a0,!=4.0.0a1 in /usr/local/lib/python3.12/dist-packages (from s3fs>=2023.5.0->nvidia-physicsnemo) (3.12.15)
Requirement already satisfied: torchvision in /usr/local/lib/python3.12/dist-packages (from timm>=0.9.12->nvidia-physicsnemo) (0.23.0+cu126)
Requirement already satisfied: pyyaml in /usr/local/lib/python3.12/dist-packages (from timm>=0.9.12->nvidia-physicsnemo) (6.0.3)
Requirement already satisfied: huggingface_hub in /usr/local/lib/python3.12/dist-packages (from timm>=0.9.12->nvidia-physicsnemo) (0.35.3)
Requirement already satisfied: safetensors in /usr/local/lib/python3.12/dist-packages (from timm>=0.9.12->nvidia-physicsnemo) (0.6.2)
Requirement already satisfied: filelock in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (3.19.1)
Requirement already satisfied: sympy>=1.13.3 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (1.13.3)
Requirement already satisfied: networkx in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (3.5)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (3.1.6)
Requirement already satisfied: nvidia-cuda-nvrtc-cu12==12.6.77 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.6.77)
Requirement already satisfied: nvidia-cuda-runtime-cu12==12.6.77 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.6.77)
Requirement already satisfied: nvidia-cuda-cupti-cu12==12.6.80 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.6.80)
Requirement already satisfied: nvidia-cudnn-cu12==9.10.2.21 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (9.10.2.21)
Requirement already satisfied: nvidia-cublas-cu12==12.6.4.1 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.6.4.1)
Requirement already satisfied: nvidia-cufft-cu12==11.3.0.4 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (11.3.0.4)
Requirement already satisfied: nvidia-curand-cu12==10.3.7.77 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (10.3.7.77)
Requirement already satisfied: nvidia-cusolver-cu12==11.7.1.2 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (11.7.1.2)
Requirement already satisfied: nvidia-cusparse-cu12==12.5.4.2 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.5.4.2)
Requirement already satisfied: nvidia-cusparselt-cu12==0.7.1 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (0.7.1)
Requirement already satisfied: nvidia-nccl-cu12==2.27.3 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (2.27.3)
Requirement already satisfied: nvidia-nvtx-cu12==12.6.77 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.6.77)
Requirement already satisfied: nvidia-nvjitlink-cu12==12.6.85 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (12.6.85)
Requirement already satisfied: nvidia-cufile-cu12==1.11.1.6 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (1.11.1.6)
Requirement already satisfied: triton==3.4.0 in /usr/local/lib/python3.12/dist-packages (from torch>=2.4.0->nvidia-physicsnemo) (3.4.0)
Requirement already satisfied: six>=1.13.0 in /usr/local/lib/python3.12/dist-packages (from treelib>=1.2.5->nvidia-physicsnemo) (1.17.0)
Requirement already satisfied: pandas>=2.2 in /usr/local/lib/python3.12/dist-packages (from xarray>=2023.1.0->nvidia-physicsnemo) (2.2.2)
Collecting donfig>=0.8 (from zarr>=2.14.2->nvidia-physicsnemo)
Downloading donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
Collecting numcodecs>=0.14 (from numcodecs[crc32c]>=0.14->zarr>=2.14.2->nvidia-physicsnemo)
Downloading numcodecs-0.16.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB)
Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo)
Downloading aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB)
Collecting botocore<1.40.19,>=1.40.15 (from aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo)
Downloading botocore-1.40.18-py3-none-any.whl.metadata (5.7 kB)
Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /usr/local/lib/python3.12/dist-packages (from aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo) (2.9.0.post0)
Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo)
Downloading jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
Requirement already satisfied: multidict<7.0.0,>=6.0.0 in /usr/local/lib/python3.12/dist-packages (from aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo) (6.6.4)
Requirement already satisfied: wrapt<2.0.0,>=1.10.10 in /usr/local/lib/python3.12/dist-packages (from aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo) (1.17.3)
Requirement already satisfied: aiohappyeyeballs>=2.5.0 in /usr/local/lib/python3.12/dist-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (2.6.1)
Requirement already satisfied: aiosignal>=1.4.0 in /usr/local/lib/python3.12/dist-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (1.4.0)
Requirement already satisfied: attrs>=17.3.0 in /usr/local/lib/python3.12/dist-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (25.3.0)
Requirement already satisfied: frozenlist>=1.1.1 in /usr/local/lib/python3.12/dist-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (1.7.0)
Requirement already satisfied: propcache>=0.2.0 in /usr/local/lib/python3.12/dist-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (0.3.2)
Requirement already satisfied: yarl<2.0,>=1.17.0 in /usr/local/lib/python3.12/dist-packages (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (1.20.1)
Collecting crc32c>=2.7 (from numcodecs[crc32c]>=0.14->zarr>=2.14.2->nvidia-physicsnemo)
Downloading crc32c-2.7.1-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.12/dist-packages (from pandas>=2.2->xarray>=2023.1.0->nvidia-physicsnemo) (2025.2)
Requirement already satisfied: tzdata>=2022.7 in /usr/local/lib/python3.12/dist-packages (from pandas>=2.2->xarray>=2023.1.0->nvidia-physicsnemo) (2025.2)
Requirement already satisfied: mpmath<1.4,>=1.1.0 in /usr/local/lib/python3.12/dist-packages (from sympy>=1.13.3->torch>=2.4.0->nvidia-physicsnemo) (1.3.0)
Requirement already satisfied: requests in /usr/local/lib/python3.12/dist-packages (from huggingface_hub->timm>=0.9.12->nvidia-physicsnemo) (2.32.4)
Requirement already satisfied: hf-xet<2.0.0,>=1.1.3 in /usr/local/lib/python3.12/dist-packages (from huggingface_hub->timm>=0.9.12->nvidia-physicsnemo) (1.1.10)
Requirement already satisfied: MarkupSafe>=2.0 in /usr/local/lib/python3.12/dist-packages (from jinja2->torch>=2.4.0->nvidia-physicsnemo) (3.0.3)
Requirement already satisfied: pillow!=8.3.*,>=5.3.0 in /usr/local/lib/python3.12/dist-packages (from torchvision->timm>=0.9.12->nvidia-physicsnemo) (11.3.0)
Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in /usr/local/lib/python3.12/dist-packages (from botocore<1.40.19,>=1.40.15->aiobotocore<3.0.0,>=2.5.4->s3fs>=2023.5.0->nvidia-physicsnemo) (2.5.0)
Requirement already satisfied: idna>=2.0 in /usr/local/lib/python3.12/dist-packages (from yarl<2.0,>=1.17.0->aiohttp!=4.0.0a0,!=4.0.0a1->s3fs>=2023.5.0->nvidia-physicsnemo) (3.10)
Requirement already satisfied: charset_normalizer<4,>=2 in /usr/local/lib/python3.12/dist-packages (from requests->huggingface_hub->timm>=0.9.12->nvidia-physicsnemo) (3.4.3)
Downloading nvidia_physicsnemo-1.2.0-py3-none-any.whl (805 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.0/806.0 kB 15.9 MB/s eta 0:00:00
Downloading onnx-1.19.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (18.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 86.2 MB/s eta 0:00:00
Downloading s3fs-2025.9.0-py3-none-any.whl (30 kB)
Downloading fsspec-2025.9.0-py3-none-any.whl (199 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 199.3/199.3 kB 16.5 MB/s eta 0:00:00
Downloading setuptools-80.9.0-py3-none-any.whl (1.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 61.5 MB/s eta 0:00:00
Downloading treelib-1.8.0-py3-none-any.whl (30 kB)
Downloading zarr-3.1.3-py3-none-any.whl (276 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 276.4/276.4 kB 20.9 MB/s eta 0:00:00
Downloading aiobotocore-2.24.2-py3-none-any.whl (85 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.4/85.4 kB 7.0 MB/s eta 0:00:00
Downloading donfig-0.8.1.post1-py3-none-any.whl (21 kB)
Downloading numcodecs-0.16.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.8 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.8/8.8 MB 110.3 MB/s eta 0:00:00
Downloading aioitertools-0.12.0-py3-none-any.whl (24 kB)
Downloading botocore-1.40.18-py3-none-any.whl (14.0 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.0/14.0 MB 96.4 MB/s eta 0:00:00
Downloading crc32c-2.7.1-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (53 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.5/53.5 kB 3.5 MB/s eta 0:00:00
Downloading jmespath-1.0.1-py3-none-any.whl (20 kB)
Installing collected packages: treelib, setuptools, numcodecs, jmespath, fsspec, donfig, crc32c, aioitertools, onnx, botocore, zarr, aiobotocore, s3fs, nvidia-physicsnemo
Attempting uninstall: setuptools
Found existing installation: setuptools 75.2.0
Uninstalling setuptools-75.2.0:
Successfully uninstalled setuptools-75.2.0
Attempting uninstall: fsspec
Found existing installation: fsspec 2025.3.0
Uninstalling fsspec-2025.3.0:
Successfully uninstalled fsspec-2025.3.0
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
ipython 7.34.0 requires jedi>=0.16, which is not installed.
datasets 4.0.0 requires fsspec[http]<=2025.3.0,>=2023.1.0, but you have fsspec 2025.9.0 which is incompatible.
gcsfs 2025.3.0 requires fsspec==2025.3.0, but you have fsspec 2025.9.0 which is incompatible.
Successfully installed aiobotocore-2.24.2 aioitertools-0.12.0 botocore-1.40.18 crc32c-2.7.1 donfig-0.8.1.post1 fsspec-2025.9.0 jmespath-1.0.1 numcodecs-0.16.3 nvidia-physicsnemo-1.2.0 onnx-1.19.0 s3fs-2025.9.0 setuptools-80.9.0 treelib-1.8.0 zarr-3.1.3
WARNING: The following packages were previously imported in this runtime:
[_distutils_hack]