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@DOH-JDJ0303 DOH-JDJ0303 released this 29 Jan 20:04
v1.5.0
25b1f86
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Learn about vigilant mode.

Major changes to how input handling, metadata wrangling, and clustering.

Input handling:

  • EPITOME will now automatically download all complete sequences and associated metadata, unless told not to.
  • Input QC is now handled in R, rather than Bash to aid metadata capture on the backend

Clustering:

  • Switched from Mash to Sourmash for better ANI prediction

Metadata:

  • Sequence metadata is now summarized for each reference. This can be used for things like predicting sample taxonomy or host based on the reference genome metadata.
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