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NargesRezaei/README.md

Hi, I'm Narges 🌿

Deep Learning β€’ Microscopy β€’ OCT β€’ Biomedical Imaging

I am a researcher working at the intersection of deep learning, microscopy, and optical imaging. My work spans OCT multilayer simulation, physics-informed neural models and SRGAN-based super-resolution for sub-resolution structure estimation.


πŸ”¬ Current Research

🟣 OCT Multilayer Simulation (MATLAB + Python)

  • Implemented forward simulation of multilayer samples
  • Used geometric optics + synthetic A-scan/B-scan generation
  • Simulated reflectivity, refractive index changes, and layer thickness
  • Created training datasets for deep learning boundary detection

🟣 Deep Learning for OCT Analysis

  • Model predicting number of layers (0–5 or 0–9)
  • Sub-resolution boundary localization
  • Refractive index estimation using both TensorFlow & PyTorch
  • Classical + DL hybrid models with genetic algorithms

🟣 Microscopy Super-Resolution (SRGAN)

  • Built SRGAN from scratch in TensorFlow 2.x
  • Trained on bright-field microscopy of fly wings
  • Implemented VGG19 perceptual loss + adversarial loss
  • GPU-accelerated training on NVIDIA RTX 3060
  • Achieved PSNR: 26 dB & SSIM: 0.85

πŸš€ Technologies & Tools

Python, TensorFlow, PyTorch, MATLAB, NumPy, SciPy,
OpenCV, scikit-image, Git, Linux, Jupyter.


πŸ“Œ Featured Projects

πŸ‘οΈ OCT Multilayer Simulation

MATLAB + Python model for multilayer OCT forward simulation

🧠 Boundary Localization & Refractive Index Estimation

Deep models for structural analysis in OCT

πŸ”¬ Microscopy SRGAN – TensorFlow

Super-Resolution of microscopy images using SRGAN
➑️ https://github.com/NargesRezaei/Microscopy-SRGAN-FlyWing-GPU.git


πŸ§ͺ Research Interests

  • Biomedical imaging
  • Microscopy
  • Super-resolution & GANs
  • OCT & optical modeling
  • Physics-informed deep learning
  • Inverse problems

πŸ“š Publications & Posters

  • Improving the quality of microscopic images using generative adversarial network
    Poster presentation, Iranian Optics & Photonics Conference (2024)

πŸ“« Contact

πŸ“§ nargesrezaei654@gmail.com
πŸ”— LinkedIn:

Popular repositories Loading

  1. Microscopy-SRGAN-FlyWing-GPU Microscopy-SRGAN-FlyWing-GPU Public

    GAN-based super-resolution of fly wing's bright-field microscopy images using TensorFlow and GPU acceleration

    Python

  2. NargesRezaei NargesRezaei Public