v0.12.0: lnk_pipeline_classify call site for fresh 0.22.0#66
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NewGraphEnvironment merged 1 commit intomainfrom Apr 27, 2026
Merged
v0.12.0: lnk_pipeline_classify call site for fresh 0.22.0#66NewGraphEnvironment merged 1 commit intomainfrom
NewGraphEnvironment merged 1 commit intomainfrom
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Three-line caller-side update consuming fresh's overlay simplification
(fresh#177, fresh 0.22.0):
- Drop format = "long"
- Drop long_value_col = "habitat_ind"
- Add species_col = "species_code"
- Add habitat_types = c("spawning", "rearing")
Matches bcfishpass's authoritative CSV shape (post-2026-04-26): one
row per (segment x species) with per-habitat indicator columns.
DESCRIPTION: Suggests: fresh (>= 0.22.0). Version 0.11.2 -> 0.12.0
(minor — caller-side breaking match for the fresh API).
Pipeline runs again. Vignette stays in dev/ until link#64 + link#65
land.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Summary
Caller-side update for fresh 0.22.0's overlay simplification (fresh#177). Unblocks the broken pipeline.
Diff
R/lnk_pipeline_classify.R:DESCRIPTION:Suggests: fresh (>= 0.22.0). Version0.11.2→0.12.0.Why
bcfishpass changed
user_habitat_classification.csvfrom long to row-per-(segment × species) shape on 2026-04-26. Auto-sync pulled it. fresh's overlay didn't natively understand the shape; fresh 0.22.0 (just merged) drops theformatparameter and accepts only the canonical (post-2026-04-26) shape. This PR is link's three-line caller-side adaptation.Test plan
R CMD INSTALLclean against fresh 0.22.0devtools::test(): 453 PASS, 0 FAIL, 1 pre-existing WARNtar_make()against the now-updated pipeline (deferred — separate PR for the vignette regen will exercise this)Coordination
dev/until link#64 (shape fingerprint) and link#65 (lnk_load_overrides()viacrate::crt_ingest()) land🤖 Generated with Claude Code