Need help with nvf updating after 5 months

[h0useofdupree]

Hello guys,
due to health reasons I've been unable to keep my NixOS configs up to date, which resulted in quite a few changes I needed to make. I've handled most of it and got my system running again, which is great, but NVF gives me a bit of trouble.

Before I talk too much without actually saying anything, I'll just post some logs nvim gave me and what I have tried so far:

Logs

nvim --headless "+qa" 2>&1 | tee /tmp/nvim-headless.err

output

Error detected while processing VIMINIT..script /nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/init.lua:
E5113: Error while calling lua chunk: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: module 'nvim-treesitter.ts_utils' not found:
	no field package.preload['nvim-treesitter.ts_utils']
	no file '/nix/store/rizkaz7ccp9gh69s27q7nf406nqmcnbf-luajit-2.1.1741730670-env/share/lua/5.1/nvim-treesitter/ts_utils.lua'
	no file '/nix/store/rizkaz7ccp9gh69s27q7nf406nqmcnbf-luajit-2.1.1741730670-env/share/lua/5.1/nvim-treesitter/ts_utils/init.lua'
	no file './nvim-treesitter/ts_utils.lua'
	no file '/nix/store/4qxq4arv32ly13kl3g0m5q80gm3a35xr-luajit-2.1.1741730670/share/luajit-2.1/nvim-treesitter/ts_utils.lua'
	no file '/usr/local/share/lua/5.1/nvim-treesitter/ts_utils.lua'
	no file '/usr/local/share/lua/5.1/nvim-treesitter/ts_utils/init.lua'
	no file '/nix/store/4qxq4arv32ly13kl3g0m5q80gm3a35xr-luajit-2.1.1741730670/share/lua/5.1/nvim-treesitter/ts_utils.lua'
	no file '/nix/store/4qxq4arv32ly13kl3g0m5q80gm3a35xr-luajit-2.1.1741730670/share/lua/5.1/nvim-treesitter/ts_utils/init.lua'
	no file '/nix/store/rizkaz7ccp9gh69s27q7nf406nqmcnbf-luajit-2.1.1741730670-env/lib/lua/5.1/nvim-treesitter/ts_utils.so'
	no file './nvim-treesitter/ts_utils.so'
	no file '/usr/local/lib/lua/5.1/nvim-treesitter/ts_utils.so'
	no file '/nix/store/4qxq4arv32ly13kl3g0m5q80gm3a35xr-luajit-2.1.1741730670/lib/lua/5.1/nvim-treesitter/ts_utils.so'
	no file '/usr/local/lib/lua/5.1/loadall.so'
	no file '/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/opt/blink-cmp/lua/blink/cmp/fuzzy/rust/../../../../../target/release/libnvim-treesitter/ts_utils.so'
	no file '/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/opt/blink-cmp/lua/blink/cmp/fuzzy/rust/../../../../../target/release/nvim-treesitter/ts_utils.so'
	no file '/nix/store/rizkaz7ccp9gh69s27q7nf406nqmcnbf-luajit-2.1.1741730670-env/lib/lua/5.1/nvim-treesitter.so'
	no file './nvim-treesitter.so'
	no file '/usr/local/lib/lua/5.1/nvim-treesitter.so'
	no file '/nix/store/4qxq4arv32ly13kl3g0m5q80gm3a35xr-luajit-2.1.1741730670/lib/lua/5.1/nvim-treesitter.so'
	no file '/usr/local/lib/lua/5.1/loadall.so'
	no file '/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/opt/blink-cmp/lua/blink/cmp/fuzzy/rust/../../../../../target/release/libnvim-treesitter.so'
	no file '/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/opt/blink-cmp/lua/blink/cmp/fuzzy/rust/../../../../../target/release/nvim-treesitter.so'
stack traceback:
	[C]: in function 'error'
	...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: in function 'require'
	/nix/store/fx32ha8wgljr0c1yb3zlamyfl7i7sdw1-init.lua:785: in main chunk
	[C]: in function 'dofile'
	.../3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/init.lua:5: in main chunk

---

sed -n '1,160p' /tmp/nvim-verbose.log

output

sourcing "nvim_exec2()"
line 1:     amenu     PopUp.Open\ in\ web\ browser  gx
line 2:     anoremenu PopUp.Inspect                 <Cmd>Inspect<CR>
line 3:     anoremenu PopUp.Go\ to\ definition      <Cmd>lua vim.lsp.buf.definition()<CR>
line 4:     anoremenu PopUp.Show\ Diagnostics       <Cmd>lua vim.diagnostic.open_float()<CR>
line 5:     anoremenu PopUp.Show\ All\ Diagnostics  <Cmd>lua vim.diagnostic.setqflist()<CR>
line 6:     anoremenu PopUp.Configure\ Diagnostics  <Cmd>help vim.diagnostic.config()<CR>
line 7:     anoremenu PopUp.-1-                     <Nop>
line 8:     vnoremenu PopUp.Cut                     "+x
line 9:     vnoremenu PopUp.Copy                    "+y
line 10:     anoremenu PopUp.Paste                   "+gP
line 11:     vnoremenu PopUp.Paste                   "+P
line 12:     vnoremenu PopUp.Delete                  "_x
line 13:     nnoremenu PopUp.Select\ All             ggVG
line 14:     vnoremenu PopUp.Select\ All             gg0oG$
line 15:     inoremenu PopUp.Select\ All             <C-Home><C-O>VG
line 16:     anoremenu PopUp.-2-                     <Nop>
line 17:     anoremenu PopUp.How-to\ disable\ mouse  <Cmd>help disable-mouse<CR>
line 18:   
finished sourcing nvim_exec2()
Executing: lua vim.opt.packpath:prepend('/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir');vim.opt.runtimepath:prepend('/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir');vim.g.loaded_node_provider=0;vim.g.loaded_perl_provider=0;vim.g.loaded_python_provider=0;vim.g.loaded_python3_provider=0;vim.g.loaded_ruby_provider=0
Searching for "ftplugin.vim" in runtime path
Searching for "/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/ftplugin.vim"
Searching for "/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/start/SchemaStore.nvim/ftplugin.vim"
Searching for "/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/start/alpha-nvim/ftplugin.vim"
...(many more "Start searching for" lines)
Searching for "/nix/store/lpvd9jcq8k518mrafh2srw9a41cdavyd-neovim-unwrapped-0.11.6/share/nvim/runtime/ftplugin.vim"
sourcing "/nix/store/lpvd9jcq8k518mrafh2srw9a41cdavyd-neovim-unwrapped-0.11.6/share/nvim/runtime/ftplugin.vim"
line 1: " Vim support file to switch on loading plugins for file types
line 2: "
line 3: " Maintainer:^IThe Vim Project <https://github.com/vim/vim>
line 4: " Last change:^I2023 Aug 10
line 5: " Former Maintainer:^IBram Moolenaar <Bram@vim.org>
line 6: 
line 7: if exists("did_load_ftplugin")
line 8:   finish
line 9: endif
line 10: let did_load_ftplugin = 1
line 11: 
line 12: augroup filetypeplugin
line 13:   au FileType * call s:LoadFTPlugin()
line 14: 
line 15:   func! s:LoadFTPlugin()
line 39: augroup END
finished sourcing /nix/store/lpvd9jcq8k518mrafh2srw9a41cdavyd-neovim-unwrapped-0.11.6/share/nvim/runtime/ftplugin.vim
Searching for "/nix/store/lpvd9jcq8k518mrafh2srw9a41cdavyd-neovim-unwrapped-0.11.6/lib/nvim/ftplugin.vim"
Searching for "/nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/pack/mnw/start/indent-blankline-nvim/after/ftplugin.vim"
...(many more "Start searching for" lines)

---

grep -nE "E[0-9]+|Error|ERROR|stack traceback" /tmp/nvim-verbose.log | head -n 80

output

504:                                                                                Error detected while processing VIMINIT..script /nix/store/3rayxdlf0abn8ha8zmhy8lxyxxhqv1bb-mnw-configDir/init.lua:
505:E5113: Error while calling lua chunk: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: ...pack/mnw/start/lzn-auto-require/lua/lzn-auto-require.lua:66: module 'nvim-treesitter.ts_utils' not found:
529:stack traceback:
1380:line 47:     catch /^Vim\%((\a\+)\)\=:E216/
2981:line 2:         " Johann Höchtl: reported that the call range... line causes an E488: Trailing characters
2985:line 6:         " Ingo Karkat  : E488 also in Vim 8.1.1602
3202:line 180: function! provider#clipboard#Error() abort

---

My (sad) attempts at finding out what's actually wrong here

1. Disable nvim-ufo
2. Disable languages.enableTreesitter
3. Disable languages.typescript
4. Tried looking for breaking changes that might affect this, but to no luck so far.
5. Looked at issues, found some regarding treesitter, but none with my ts_utils not found error.
6. Searched for issues outside of NVF. Found some ts_utils issues in certain nvim language modules which have all been solved upstream.

My config

./nvf/default.nix

{
  pkgs,
  lib,
  ...
}: {
  imports = [
    ./keymaps
    ./plugins
    ./theme.nix
  ];
  programs.nvf = {
    enable = true;
    settings = {
      vim = {
        viAlias = true;
        vimAlias = true;
        debugMode = {
          enable = false;
          level = 16;
          logFile = "/tmp/nvim.log";
        };
        globals = {
          neovide_padding_top = 0;
          neovide_padding_bottom = 0;
          neovide_padding_right = 0;
          neovide_padding_left = 0;
          neovide_opacity = 0.85;
          neovide_normal_opacity = 0.8;
        };

        clipboard = {
          enable = true;
          providers = {
            wl-copy.enable = true;
          };
          registers = "unnamedplus";
        };

        diagnostics = {
          enable = true;
          config = {
            # virtual_lines = {
            #   only_current_line = true;
            # };
            virtual_lines = false;
            virtual_text = false;
            underline = true;
            signs = {
              text = {
                "vim.diagnostic.severity.ERROR" = "";
                "vim.diagnostic.severity.WARN" = "";
                "vim.diagnostic.severity.INFO" = "";
                "vim.diagnostic.severity.HINT" = "󰌶";
              };
            };
            update_in_insert = false;
          };
        };

        extraPlugins = {
          betterEscape = {
            package = pkgs.vimPlugins.better-escape-nvim;
            setup = ''
              require("better_escape").setup {
                default_mappings = false,
                mappings = {
                  i = {
                    j = {
                      j = "<Esc>",
                    },
                  },
                  t = {
                    ["<leader>"] = {
                      q = "<C-\\><C-n>",
                    },
                  },
                },
              }
            '';
          };
          spider = {
            package = pkgs.vimPlugins.nvim-spider;
            setup = ''
              require("spider").setup {
                skipInsignificantPunctuation = true,
                consistentOperatorPending = false,
                subwordMovement = true,
                customPatterns = {},
              }
            '';
          };

          # Plugin to provide JSON schemas
          schemastore = {
            package = pkgs.vimPlugins.SchemaStore-nvim;
          };

          # Plugin that registers json-ls manually
          jsonLsp = {
            package = pkgs.vimPlugins.nvim-lspconfig;
            setup = ''
              local lspconfig = require("lspconfig")
              local schemastore = require("schemastore")

              lspconfig.jsonls.setup {
                cmd = { "${pkgs.vscode-langservers-extracted}/bin/vscode-json-language-server", "--stdio" },
                capabilities = capabilities,
                on_attach = default_on_attach,
                settings = {
                  json = {
                    schemas = schemastore.json.schemas(),
                    validate = { enable = true },
                  },
                },
                init_options = {
                  provideFormatter = true,
                },
              }
            '';
          };
        };

        options = {
          updatetime = 100;
          timeoutlen = 500;

          # Line numbers
          relativenumber = true;
          number = true;
          hidden = true; # Keep closed buffer open in the background
          mouse = "a";
          mousemodel = "extend";
          splitbelow = true;
          splitright = true;

          swapfile = false;
          modeline = true;
          modelines = 100;
          undofile = true;
          incsearch = true;
          inccommand = "split";
          ignorecase = true;
          smartcase = true;
          scrolloff = 8;
          cursorline = false;
          cursorcolumn = false;
          signcolumn = "yes";
          laststatus = 3;
          fileencoding = "utf-8";
          termguicolors = true;
          wrap = true;
          linespace = 8;

          # Tab options
          tabstop = 2; # Number of spaces a <Tab> represents
          shiftwidth = 2; # Number of spaces for each (auto)indent
          expandtab = true; # Expand <Tab> to spaces in Insert mode
          autoindent = true;

          textwidth = 0;
          sessionoptions = "buffers,curdir,folds,help,tabpages,winsize,winpos,terminal";

          # Folding
          foldcolumn = "1";
          foldlevel = 99; # Folds deeper than this level are closed
          foldlevelstart = 99;
          foldenable = true;
          foldmethod = "manual";
          # foldexpr = "nvim_treesitter#foldexpr()";

          # Window title: show shortened file path (not CWD)
          title = true;
          # Use expand('%:p:~') for full path with '~', then pathshorten() to compact directories
          titlestring = "%{pathshorten(expand('%:p:~'))}";
        };

        spellcheck = {
          enable = false;
        };

        lsp = {
          enable = true;
          formatOnSave = true;
          lspkind.enable = true;
          lightbulb.enable = true;
          lspsaga.enable = true;
          trouble.enable = true;
          lspSignature.enable = false;
          otter-nvim.enable = true;
          nvim-docs-view = {
            enable = false;
            mappings = {
              viewToggle = "";
              viewUpdate = "";
            };
          };
        };

        debugger = {
          nvim-dap = {
            enable = true;
            ui.enable = true;
          };
        };

        languages = {
          enableFormat = true;
          enableTreesitter = true;
          enableExtraDiagnostics = true;

          assembly.enable = true;
          nix = {
            enable = true;
            lsp = {
              enable = true;
              servers = ["nil"];
            };
            treesitter = {
              enable = true;
            };
          };
          markdown = {
            enable = true;
            extensions = {
              render-markdown-nvim = {
                enable = true;
              };
            };
          };
          bash = {
            enable = true;
          };
          clang.enable = true;
          csharp.enable = true;
          css.enable = true;
          # BUG: Re-enable once build is fixed
          html.enable = false;
          sql.enable = true;
          java.enable = true;
          kotlin.enable = true;
          ts.enable = false;
          go.enable = true;
          lua.enable = true;
          # BUG: Re-enable once build is fixed
          zig.enable = false;
          python = {
            enable = true;
            format = {
              enable = true;
              type = ["black"]; #NOTE: ["black", "black-and-isort", "isort", "ruff"]
            };
            lsp = {
              enable = true;
              servers = ["basedpyright"];
            };
            treesitter.enable = true;
          };
          typst.enable = true;
          rust = {
            enable = true;
            extensions.crates-nvim.enable = true;
          };
          svelte.enable = true;
          yaml.enable = true;

          astro.enable = false;
          nu.enable = false;
          julia.enable = false;
          vala.enable = false;
          scala.enable = false;
          r.enable = false;
          gleam.enable = false;
          dart.enable = false;
          ocaml.enable = false;
          elixir.enable = false;
          haskell.enable = false;
          ruby.enable = false;

          tailwind.enable = false;
          nim.enable = false;
        };

        visuals = {
          nvim-scrollbar.enable = false;
          nvim-web-devicons.enable = true;
          nvim-cursorline.enable = true;
          cinnamon-nvim.enable = true;
          fidget-nvim.enable = true;
          highlight-undo.enable = true;
          indent-blankline.enable = true;
        };

        statusline = {
          lualine = {
            enable = true;
            # theme = "auto";
          };
        };

        mini = {
          statusline = {
            enable = false;
          };
        };

        # FIX: Theme is ugly and unreadable
        # luaConfigPost = ''
        #   ${builtins.readFile ./lua/themes/m3scheme.lua}
        # '';

        autopairs.nvim-autopairs.enable = true;
        autocomplete = {
          nvim-cmp.enable = false;
          blink-cmp = {
            enable = true;
            friendly-snippets.enable = true;
            setupOpts = {
              signature = {
                enabled = true;
                window = {
                  border = "rounded";
                };
                trigger = {
                  enabled = true;
                  show_on_trigger_character = true;
                  show_on_insert_on_trigger_character = true;
                };
              };
              completion = {
                list.selection = {
                  preselect = true;
                  auto_insert = true;
                };
                documentation = {
                  auto_show = true;
                  auto_show_delay_ms = 200;
                };
                menu.auto_show = true;
                ghost_text.enabled = true;
              };
              keymap = {
                preset = "default";
              };
              cmdline = {
                keymap = {
                  preset = "default";
                };
                completion = {
                  menu = {
                    auto_show = true;
                  };
                };
              };
            };
          };
        };
        snippets = {
          luasnip = {
            enable = true;
            setupOpts = {
              enable_autosnippets = true;
            };
          };
        };

        tabline = {
          nvimBufferline = {
            enable = true;
            setupOpts = {
              options = {
                tab_size = 18;
                indicator.style = "icon";
              };
            };
          };
        };

        treesitter = {
          fold = true;
          context.enable = false;
        };

        binds = {
          whichKey = {
            enable = true;
            register = {
              "<leader>/" = "Toggle Line/Block Comment";
            };
          };
          cheatsheet.enable = true;
        };

        telescope.enable = false;
        fzf-lua = {
          enable = true;
        };

        git = {
          enable = true;
          gitsigns.enable = true;
          gitsigns.codeActions.enable = false;
        };

        minimap = {
          codewindow.enable = true;
        };

        dashboard = {
          alpha = {
            enable = true;
          };
          startify = {
            enable = false;
            # bookmarks = {
            #   f = "~/.dotfiles/flake.nix";
            #   c = "~/.dotfiles/home/editors/nvf/default.nix";
            # };
          };
        };

        notify = {
          nvim-notify.enable = true;
        };

        projects = {
          project-nvim.enable = true;
        };

        utility = {
          icon-picker.enable = true;
          surround.enable = true;
          diffview-nvim.enable = true;
          direnv.enable = true;
          motion = {
            hop.enable = true;
            leap.enable = false;
            precognition.enable = false;
          };
        };

        notes = {
          mind-nvim.enable = false;
          todo-comments.enable = true;
        };

        terminal = {
          toggleterm = {
            enable = true;
            lazygit.enable = true;
          };
        };

        ui = {
          borders = {
            enable = true;
            plugins = {
              fastaction.enable = true;
              lsp-signature.enable = true;
              nvim-cmp.enable = false;
              which-key.enable = true;
            };
          };
          noice.enable = true;
          colorful-menu-nvim.enable = true;
          colorizer = {
            enable = true;
            setupOpts = {
              filetypes = {
                "*" = {};
              };
            };
          };
          illuminate.enable = true;
          breadcrumbs = {
            enable = false;
            navbuddy.enable = true;
          };
          smartcolumn = {
            enable = true;
            setupOpts = {
              custom_colorcolumn = {
                nix = "110";
                ruby = "120";
                java = "130";
                go = ["90" "130"];
              };
            };
          };
          fastaction.enable = true;
          modes-nvim = {
            enable = true;
            setupOpts = {
              line_opacity.visual = 0.2;
            };
          };
          nvim-ufo = {
            enable = true;
            setupOpts = {
              # Use LSP, then Treesitter, then indent
              provider_selector =
                lib.generators.mkLuaInline
                #lua
                ''
                  function(_, filetype, buftype)
                    local function handleFallbackException(bufnr, err, providerName)
                      if type(err) == "string" and err:match "UfoFallbackException" then
                        return require("ufo").getFolds(bufnr, providerName)
                      else
                        return require("promise").reject(err)
                      end
                    end

                    return (filetype == "" or buftype == "nofile") and "indent"
                        or function(bufnr)
                          return require("ufo")
                              .getFolds(bufnr, "lsp")
                              :catch(
                                function(err)
                                  return handleFallbackException(bufnr, err, "treesitter")
                                end
                              )
                              :catch(
                                function(err)
                                  return handleFallbackException(bufnr, err, "indent")
                                end
                              )
                        end
                  end,
                '';
              close_fold_kinds_for_ft = {default = ["comment" "imports"];};
              preview = {
                win_config = {
                  border = "rounded";
                  winblend = 12;
                  winhighlight = "Normal:Normal";
                  maxheight = 20;
                };
                mappings = {
                  scrollU = "<C-u>";
                  scrollD = "<C-d>";
                  jumpTop = "[";
                  jumpBot = "]";
                  close = "q";
                  switch = "<Tab>";
                  trace = "<CR>";
                };
              };
            };
          };
        };

        assistant = {
          chatgpt = {
            enable = false;
          };
          copilot = {
            enable = false;
            cmp.enable = true;

            mappings = {
              panel = {
                open = "<C-CR>";
              };
            };
          };
        };

        comments = {
          comment-nvim = {
            enable = true;
            mappings = {
              toggleCurrentLine = "<leader>/";
              toggleSelectedLine = "<leader>/";
            };
          };
        };
      };
    };
  };
}

Thank you all in advance and most of all, thanks to @NotAShelf and the community/maintainers for providing this awesome solution for NixOS.

[h0useofdupree]

It seems that codewindow is the culprit.
I found #13 which addresses a similar issue regarding ts_utils.
Commenting out / disabling codewindow fixes my issue.