Release version 1.7.0 with new FHIR resolution features#3
Merged
alex-omophub merged 1 commit intomainfrom Apr 14, 2026
Merged
Conversation
- Updated `resolve_batch()` to support tibble output via the `as_tibble` parameter, enhancing usability with `dplyr` and `tidyr`. - Introduced standalone wrapper functions: `fhir_resolve()`, `fhir_resolve_batch()`, and `fhir_resolve_codeable_concept()` for easier integration in pipelines. - Added `omophub_fhir_url()` function to construct the OMOPHub FHIR Terminology Service base URL for various FHIR versions. - Enhanced documentation and tests to cover new features and ensure robustness.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
resolve_batch()to support tibble output via theas_tibbleparameter, enhancing usability withdplyrandtidyr.fhir_resolve(),fhir_resolve_batch(), andfhir_resolve_codeable_concept()for easier integration in pipelines.omophub_fhir_url()function to construct the OMOPHub FHIR Terminology Service base URL for various FHIR versions.Summary by cubic
Release 1.7.0 adds tibble output for batch FHIR resolution and pipeline-friendly wrapper functions, plus a FHIR interop URL helper for easier client setup.
resolve_batch(as_tibble = TRUE)returns a flattibble::tibble(one row per coding) ready fordplyr/tidyr; batch summary is attached as an attribute; default list return is unchanged.fhir_resolve(),fhir_resolve_batch(),fhir_resolve_codeable_concept()for use alongside the R6 API.omophub_fhir_url(version)builds the OMOPHub FHIR Terminology Service base URL (r4,r4b,r5,r6) for use with clients likehttr2orfhircrackr.Written for commit 7b55688. Summary will update on new commits.