use newer numpy & python

[jdries]

No description provided.

[jdries]

@copilot add installation of openblas to github actions, to fix scipy build

[jdries]

@copilot resolve the merge conflicts in this pull request

[Copilot]

@copilot add installation of openblas to github actions, to fix scipy build

Done in 9665e44 — the workflow now installs libopenblas-dev before the Python dependency step so SciPy can build on GitHub Actions.

Warning

Firewall rules blocked me from connecting to one or more addresses (expand for details)

I tried to connect to the following addresses, but was blocked by firewall rules:

• artifactory.vgt.vito.be
  • Triggering command: /tmp/fusets-openblas-venv/bin/python /tmp/fusets-openblas-venv/bin/python /tmp/fusets-openblas-venv/lib/python3.12/site-packages/pip/__pip-REDACTED__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-y3iqfj22/overlay --no-warn-script-location --disable-pip-version-check --no-compile --target (dns block)
  • Triggering command: /tmp/fusets-openblas-venv/bin/pip pip install .[dev] --extra-index-url REDACTED (dns block)
  • Triggering command: /tmp/fusets-openblas-venv/bin/python /tmp/fusets-openblas-venv/bin/python /tmp/fusets-openblas-venv/lib/python3.12/site-packages/pip/__pip-REDACTED__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-uxvr7skr/overlay --no-warn-script-location --disable-pip-version-check --no-compile --target (dns block)
• dl.google.com
  • Triggering command: /usr/lib/apt/methods/https /usr/lib/apt/methods/https (dns block)

If you need me to access, download, or install something from one of these locations, you can either:

• Configure Actions setup steps to set up my environment, which run before the firewall is enabled
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[Copilot]

@copilot resolve the merge conflicts in this pull request

Resolved in 5f501ec. The merge keeps numpy>=2.0 from py311 while accepting the MOGPR removal from main (which removes scipy, GPy, and matplotlib dependencies).

[jdries]

@copilot use uv in github actions to build wheel and resolve dependencies

[Copilot]

@copilot use uv in github actions to build wheel and resolve dependencies

Done in 9f5ad9c. Both workflows now use uv with caching enabled:

• lint-and-test.yml: Uses uv pip install --system for dependency resolution
• build-wheel.yml: Uses uv build --wheel for building the wheel

[jdries]

@copilot resolve error caused by newer version of numpy:
/opt/hostedtoolcache/Python/3.12.13/x64/lib/python3.12/site-packages/fusets/whittaker.py:106: in callback
dates_mask = np.in1d(XXd, output_dates)

[Copilot]

@copilot resolve error caused by newer version of numpy:
/opt/hostedtoolcache/Python/3.12.13/x64/lib/python3.12/site-packages/fusets/whittaker.py:106: in callback
dates_mask = np.in1d(XXd, outp...

Fixed in e1d9af7. Replaced deprecated np.in1d with np.isin for numpy 2.0 compatibility. This is a drop-in replacement with identical behavior.

Warning

Firewall rules blocked me from connecting to one or more addresses (expand for details)

I tried to connect to the following addresses, but was blocked by firewall rules:

• artifactory.vgt.vito.be
  • Triggering command: /usr/bin/python3 /usr/bin/python3 /usr/lib/python3/dist-packages/pip/__pip-REDACTED__.py install --ignore-installed --no-user --prefix /tmp/pip-build-env-4f30pp5p/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i REDACTED --extra-index-url REDACTED -- setuptools>=42 wheel numpy>=2.0 (dns block)
  • Triggering command: /usr/bin/pip pip install -e .[dev] --extra-index-url REDACTED (dns block)

If you need me to access, download, or install something from one of these locations, you can either:

• Configure Actions setup steps to set up my environment, which run before the firewall is enabled
• Add the appropriate URLs or hosts to the custom allowlist in this repository's Copilot coding agent settings (admins only)