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Fix cache path and add null-safety to sequence data rendering #67

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Merged
t0mdavid-m merged 1 commit into from
May 19, 2026
+18 −12
Merged

Fix cache path and add null-safety to sequence data rendering #67

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2 changes: 1 addition & 1 deletion content/FLASHDeconv/FLASHDeconvLayoutManager.py
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Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@
# Setup cache access
file_manager = FileManager(
st.session_state["workspace"],
Path(st.session_state['workspace'], 'flashdeconv', 'cache')
Path(st.session_state['workspace'], 'cache')
)

def get_sequence():
Expand Down
28 changes: 17 additions & 11 deletions src/render/update.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ def get_sequence(selection_store):
# Setup cache access
file_manager = FileManager(
st.session_state["workspace"],
Path(st.session_state['workspace'], 'flashdeconv', 'cache')
Path(st.session_state['workspace'], 'cache')
)

# Check if sequence has been set
Expand Down Expand Up @@ -85,18 +85,24 @@ def render_internal_fragment_data(sequence):
def update_data(data, out_components, selection_store, additional_data, tool):
component = out_components[0][0]['componentArgs']['title']
if (
(component in ['Sequence View', 'Internal Fragment Map'])
(component in ['Sequence View', 'Internal Fragment Map'])
and (tool != 'flashtnt')
):
data['sequence_data'] = {
0: render_sequence_data(get_sequence(selection_store)[0])
}
if (component == 'Internal Fragment Map') and (tool != 'flashtnt'):
data['internal_fragment_data'] = {
0: render_internal_fragment_data(get_sequence(selection_store)[0])
}

return data
sequence = get_sequence(selection_store)
if sequence is None:
data['sequence_data'] = {}
if component == 'Internal Fragment Map':
data['internal_fragment_data'] = {}
else:
data['sequence_data'] = {
0: render_sequence_data(sequence[0])
}
if component == 'Internal Fragment Map':
data['internal_fragment_data'] = {
0: render_internal_fragment_data(sequence[0])
}

return data


def filter_data(data, out_components, selection_store, additional_data, tool):
Expand Down
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