[STILL AVAILABILITY - multi-task issue] Additional Tests

[jcharkow]

Currently, there are specific tests for the pyopenms pages however no tests for the TOPP tool pages. The only tests that exists are opening these pages and ensuring they don't crash. Please use the pytest framework as outlined in test_gui.py file.

The pages that require further testing are the following:

• content/simple_workflow.py
• content/run_subprocess.py
• content/file_upload.py - upload an example file and check that the page displays the example file is uploaded.

Pages that might be more difficult to test are below. They require (#137) to be addressed

• content/topp_workflow_file_upload.py
  • Upload an example file and ensure that page displays that the example file is uploaded.
• content/topp_workflow_parameter.py
  • Ensure parameters displayed are correct
• content/topp_workflow_execution.py
  • Ensure that a TOPP tool is run without errors
  • We recommend testing out FeatureFinderMetabo as this is built into the template.
• content/topp_workflow_results.py
  • After results are run ensure that if click on a certain line the a barplot is displayed.

If you are interested in helping with this issue, please specify which pages you plan on testing so that other students can also help out.

[SIDDHARTH1-1CHAUHAN]

Sir I would like to take up the content/file_upload.py page
@jcharkow Kindly assign it to me

[jcharkow]

Sir I would like to take up the content/file_upload.py page @jcharkow Kindly assign it to me

Yes your are welcome to take that test. What I would recommend is to programmatically "upload" one of the .mzML files from the example-data and check that the file is present in the table list below.

[Srajald]

@jcharkow
Sir , I would like to test these files ...
content/simple_workflow.py
content/run_subprocess.py
Kindly assign it to me sir..
I would welcome any recommendation from you also..

[jcharkow]

@jcharkow Sir , I would like to test these files ... content/simple_workflow.py content/run_subprocess.py Kindly assign it to me sir.. I would welcome any recommendation from you also..

You are welcome to work on this! I would recommend first familiarizing yourself with the streamlit-pages for these. (under other topics)

For simple Workflow a suitable test would be programmatically altering the x and the y dimension and ensuring that the generated table is those dimensions.

For run subprocess you would have to programmatically ensure that a file is selected and run the extract ids button. Then, ensure that the appropriate output is generated.

[blenbot]

Sir, I would like to give this file content/topp_workflow_file_upload.py a shot, please let me know if you have any advice and please assign me this issue. thanks! :)

[Srajald]

@jcharkow @t0mdavid-m
Hi Sir,
I have added the additional test PR, I have raised a PR for that , please review the code sir #167...
If there are any other issue , then you can assign me ..
Thanks

[jcharkow]

Sir, I would like to give this file content/topp_workflow_file_upload.py a shot, please let me know if you have any advice and please assign me this issue. thanks! :)

Yes, you are welcome to take this on!

I would recommend ensuring that OpenMS is also installed on your computer. Then following instructions similar to the file_upload.py test above.

Playing around with the streamlit template first will be an asset.