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Restore some broken links. Some are fixed by this. Others were already broken.
Update old references to SwissTPH/openmalaria. Ran `find . | grep "\.md$" | xargs sed -i "s/SwissTPH\/openmalaria/OpenMalaria-org\/openmalaria/g"`.
Add info on kinds of automated tests.
Removing docs on unmaintained tool per discussion on issue 416.
Updated DeveloperGuide (markdown)
Add info about deleting tags
Overhaul DeveloperGuide
Add info about testing with travis