replaced htslib with noodles and created some minor changes#36
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madhavajay merged 2 commits intomainfrom Apr 14, 2026
Merged
replaced htslib with noodles and created some minor changes#36madhavajay merged 2 commits intomainfrom
madhavajay merged 2 commits intomainfrom
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Runs lint.sh (cargo fmt + clippy -D warnings) and test.sh, plus the bioscript-formats integration tests which exercise the new CRAM streaming path and MD5 fallback against the checked-in fixtures. Submodules are fetched recursively so noodles is available as a patch. Also gitignores context/ (read-only htslib reference material kept locally during the noodles migration; not part of the build).
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