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Replace missing opentps.core.examples imports with local helper modules #6

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Merged
Eliot-P merged 4 commits into from
Feb 3, 2026
Merged

Replace missing opentps.core.examples imports with local helper modules #6

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1f2f7bd
Initial plan
Copilot Feb 3, 2026
842cf55
Add helper modules syntheticData.py and showStuff.py and update imports
Copilot Feb 3, 2026
d51ef7c
Refactor to use relative imports with __init__.py files instead of sy…
Copilot Feb 3, 2026
c9b7e7c
Remove __init__.py files and use simple direct imports
Copilot Feb 3, 2026
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4 changes: 3 additions & 1 deletion examples/Segmentation/run_Segmentation.py
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from opentps.core.data.images import CTImage
from opentps.core.processing.segmentation.segmentation3D import applyThreshold
from opentps.core.processing.segmentation.segmentationCT import SegmentationCT
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import *

logger = logging.getLogger(__name__)

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4 changes: 3 additions & 1 deletion examples/dynamicData/exampleInterFractionChanges.py
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from opentps.core.processing.deformableDataAugmentationToolBox.modelManipFunctions import *
from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData, applyTransform3D
from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
from opentps.core.examples.syntheticData import createSynthetic4DCT
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import createSynthetic4DCT

logger = logging.getLogger(__name__)

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4 changes: 3 additions & 1 deletion examples/dynamicData/run_exampleApplyBaselineShiftToModel.py
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from opentps.core.processing.imageProcessing.syntheticDeformation import applyBaselineShift
from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
from opentps.core.data.dynamicData._dynamic3DSequence import Dynamic3DSequence
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import *

logger = logging.getLogger(__name__)

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4 changes: 3 additions & 1 deletion examples/dynamicData/run_exampleDeformableBreathigDataAugmentation.py
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from opentps.core.processing.deformableDataAugmentationToolBox.generateDynamicSequencesFromModel import generateDynSeqFromBreathingSignalsAndModel
from opentps.core.processing.imageProcessing.imageTransform3D import getVoxelIndexFromPosition
from opentps.core.processing.imageProcessing.resampler3D import resample
from opentps.core.examples.syntheticData import*
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import*

logger = logging.getLogger(__name__)

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4 changes: 3 additions & 1 deletion examples/dynamicData/run_exampleDeformationFromWeightMaps.py
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from opentps.core.processing.imageProcessing import resampler3D
from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
from opentps.core.examples.syntheticData import createSynthetic4DCT
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import createSynthetic4DCT
from opentps.core.processing.deformableDataAugmentationToolBox.weightMaps import generateDeformationFromTrackers, generateDeformationFromTrackersAndWeightMaps

logger = logging.getLogger(__name__)
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4 changes: 3 additions & 1 deletion examples/dynamicData/run_exampleMidP.py
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from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
from opentps.core.data.dynamicData._dynamic3DSequence import Dynamic3DSequence
from opentps.core.data.images import CTImage
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import *

logger = logging.getLogger(__name__)
#%%
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6 changes: 4 additions & 2 deletions examples/imageProcessing/cupyVSsitkTransforms.py
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from opentps.core.data.images import VectorField3D
from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
from opentps.core.data._transform3D import Transform3D
from opentps.core.examples.showStuff import showModelWithAnimatedFields
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from showStuff import showModelWithAnimatedFields
from syntheticData import *
from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
from opentps.core.processing.imageProcessing.resampler3D import resample
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6 changes: 4 additions & 2 deletions examples/imageProcessing/exampleTransform3DCupy.py
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from opentps.core.data.images import VectorField3D
from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
from opentps.core.data._transform3D import Transform3D
from opentps.core.examples.showStuff import showModelWithAnimatedFields
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from showStuff import showModelWithAnimatedFields
from syntheticData import *
from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
from opentps.core.processing.imageProcessing.resampler3D import resample
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4 changes: 3 additions & 1 deletion examples/imageProcessing/run_exampleApplyBaselineShift.py
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from opentps.core.data.images import CTImage
from opentps.core.data.images import ROIMask
from opentps.core.processing.imageProcessing.syntheticDeformation import applyBaselineShift
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import *

logger = logging.getLogger(__name__)

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6 changes: 4 additions & 2 deletions examples/imageProcessing/run_exampleTransform3D.py
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from opentps.core.data.images import VectorField3D
from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
from opentps.core.data._transform3D import Transform3D
from opentps.core.examples.showStuff import showModelWithAnimatedFields
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from showStuff import showModelWithAnimatedFields
from syntheticData import *
from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
from opentps.core.processing.imageProcessing.resampler3D import resample
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5 changes: 3 additions & 2 deletions examples/multiplePythonEnv/run_backAndForthParent.py
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from subprocess import Popen, PIPE
from pathlib import Path
import subprocess

from opentps.core.examples.syntheticData import createSynthetic3DCT
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import createSynthetic3DCT

#%%
# Set the child script environnement path and child scrip file path
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5 changes: 3 additions & 2 deletions examples/multiplePythonEnv/run_sharedMemoryParent.py
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import subprocess
from multiprocessing import shared_memory
from pathlib import Path

from opentps.core.examples.syntheticData import createSynthetic3DCT
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import createSynthetic3DCT

#%%
# set the child script environnement path and child scrip file path
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4 changes: 3 additions & 1 deletion examples/registration/run_exampleMorphons.py
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from opentps.core.data.images import CTImage
from opentps.core.processing.registration.registrationMorphons import RegistrationMorphons
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import *

logger = logging.getLogger(__name__)

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4 changes: 3 additions & 1 deletion examples/registration/run_exampleRigid.py
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#import the needed opentps.core packages

from opentps.core.processing.registration.registrationRigid import RegistrationRigid
from opentps.core.examples.syntheticData import *
import sys, os
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
from syntheticData import *
from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData

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