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merged 2 commits into from
Aug 27, 2025
Merged

Docker Workflow Updates #454

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199ad74
Workflows: Removed old docs auto push. Added/renamed Docker images, r…
jjacobson95 Aug 21, 2025
e37f13e
fully removed the workflow
jjacobson95 Aug 21, 2025
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178 changes: 149 additions & 29 deletions .github/workflows/build.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ jobs:
- name: Build and push broad sanger omics
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.broad_sanger_omics
file: ./coderbuild/docker/Dockerfile.broad_sanger_omics
tags: |
sgosline/broad-sanger-omics:latest
sgosline/broad-sanger-omics:${{ github.ref_name }}
Expand All @@ -49,7 +49,7 @@ jobs:
- name: Build and push broad sanger experiment
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.broad_sanger_exp
file: ./coderbuild/docker/Dockerfile.broad_sanger_exp
tags: |
sgosline/broad-sanger-exp:latest
sgosline/broad-sanger-exp:${{ github.ref_name }}
Expand All @@ -74,7 +74,7 @@ jobs:
- name: Build and push genes
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.genes
file: ./coderbuild/docker/Dockerfile.genes
tags: |
sgosline/genes:latest
sgosline/genes:${{ github.ref_name }}
Expand All @@ -98,14 +98,38 @@ jobs:
- name: Build and push hcmi
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.hcmi
file: ./coderbuild/docker/Dockerfile.hcmi
tags: |
sgosline/hcmi:latest
sgosline/hcmi:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-cptac:
# build-cptac:
# runs-on: ubuntu-latest
# steps:
# - name: Checkout
# uses: actions/checkout@v3
# - name: Set up QEMU
# uses: docker/setup-qemu-action@v3
# - name: Set up Docker Buildx
# uses: docker/setup-buildx-action@v3
# - name: Login to DockerHub
# uses: docker/login-action@v3
# with:
# username: ${{ secrets.DOCKERHUB_USERNAME }}
# password: ${{ secrets.DOCKERHUB_PASSWORD }}
# - name: Build and push cptac
# uses: docker/build-push-action@v3
# with:
# file: ./coderbuild/docker/Dockerfile.cptac
# tags: |
# sgosline/cptac:latest
# sgosline/cptac:${{ github.ref_name }}
# push: true
# platforms: linux/amd64

build-mpnst:
runs-on: ubuntu-latest
steps:
- name: Checkout
Expand All @@ -119,17 +143,17 @@ jobs:
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push cptac
- name: Build and push mpnst
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.cptac
file: ./coderbuild/docker/Dockerfile.mpnst
tags: |
sgosline/cptac:latest
sgosline/cptac:${{ github.ref_name }}
sgosline/mpnst:latest
sgosline/mpnst:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-mpnst:
build-beataml:
runs-on: ubuntu-latest
steps:
- name: Checkout
Expand All @@ -143,17 +167,17 @@ jobs:
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push mpnst
- name: Build and push beataml
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.mpnst
file: ./coderbuild/docker/Dockerfile.beataml
tags: |
sgosline/mpnst:latest
sgosline/mpnst:${{ github.ref_name }}
sgosline/beataml:latest
sgosline/beataml:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-beataml:
build-pancreatic:
runs-on: ubuntu-latest
steps:
- name: Checkout
Expand All @@ -167,17 +191,17 @@ jobs:
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push beataml
- name: Build and push pancreatic
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.beataml
file: ./coderbuild/docker/Dockerfile.pancreatic
tags: |
sgosline/beataml:latest
sgosline/beataml:${{ github.ref_name }}
sgosline/pancreatic:latest
sgosline/pancreatic:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-pancpdo:
build-upload:
runs-on: ubuntu-latest
steps:
- name: Checkout
Expand All @@ -191,17 +215,17 @@ jobs:
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push pancpdo
- name: Build and push upload
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.pancpdo
file: ./coderbuild/docker/Dockerfile.upload
tags: |
sgosline/pancpdo:latest
sgosline/pancpdo:${{ github.ref_name }}
sgosline/upload:latest
sgosline/upload:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-upload:
build-sarcoma:
runs-on: ubuntu-latest
steps:
- name: Checkout
Expand All @@ -215,12 +239,108 @@ jobs:
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push upload
- name: Build and push sarcoma
uses: docker/build-push-action@v3
with:
file: ./build/docker/Dockerfile.upload
file: ./coderbuild/docker/Dockerfile.sarcoma
tags: |
sgosline/upload:latest
sgosline/upload:${{ github.ref_name }}
sgosline/sarcoma:latest
sgosline/sarcoma:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-liver:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push liver
uses: docker/build-push-action@v3
with:
file: ./coderbuild/docker/Dockerfile.liver
tags: |
sgosline/liver:latest
sgosline/liver:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-bladder:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push bladder
uses: docker/build-push-action@v3
with:
file: ./coderbuild/docker/Dockerfile.bladder
tags: |
sgosline/bladder:latest
sgosline/bladder:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-colorectal:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push colorectal
uses: docker/build-push-action@v3
with:
file: ./coderbuild/docker/Dockerfile.colorectal
tags: |
sgosline/colorectal:latest
sgosline/colorectal:${{ github.ref_name }}
push: true
platforms: linux/amd64

build-novartis:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Set up QEMU
uses: docker/setup-qemu-action@v3
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Build and push novartis
uses: docker/build-push-action@v3
with:
file: ./coderbuild/docker/Dockerfile.novartis
tags: |
sgosline/novartis:latest
sgosline/novartis:${{ github.ref_name }}
push: true
platforms: linux/amd64
48 changes: 0 additions & 48 deletions .github/workflows/main.yml
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