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Welcome to the jmzReader wiki!

Introduction The jmzReader library is a collection of Java APIs to parse mass-spectrometry peak list files of arbitrary size. All parsers were optimized for the use with the Proteomics Standards Initiative's (PSI) standard format for proteomics results mzIdentML.

mzIdentML files do not contain spectra information themselves but only reference the identified spectra in external peak list files. All parsers of the jmzReader library support the various methods supported by mzIdentML to reference spectra and thus are the perfect basis for any mzIdentML based software development.

Detailed examples on how to use the library can be found in the jmzReader interface documentation page.