A. thaliana (Ler 0) 20kb Size Selected with P4 C2

Instrument:  PacBio RS II
Chemistry:  C2
Enzyme: P4

Summary

This dataset contains the assembly results for Arabidopsis thaliana (Ler-0) using data generated using PacBio RS II System and P4-C2 chemistry on a size selected 20kb library. Preassembled reads and final assembly results are provided. Assembly results can be achieved using SMRT Analysis 2.0 or higher.

Assembly Statistics:
Genome size: 124.6 Mb
GC content: 33.92%
Raw data: 11 Gb
Assembly coverage: 15.37x
Polished Contigs:	540
Max Contig Length:	12.98 Mb
N50 Contig Length:	6.19 Mb
Sum of Contig Lengths:	124.57 Mb

Download Dataset

[Listing of files for download] (https://gist.github.com/jgpb/6368150)

To download, you can use wget or curl to go through the list of the file. For example, to download it with bash, save the list as file file_list and you can use a simple loop to download the files:

for f in `cat file_list`;do wget $f;done 

The raw data for this assembly is available upon request. Please contact us, or convey your interest via twitter @PacBio. We appreciate if you could follow us on twitter so that we can direct message in response.