GPML2013a vs GPML2017

Pathway element

GPML2013a:

<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Acetylcholine Synthesis" Organism="Homo sapiens">
  <Graphics BoardWidth="829.0515247108307" BoardHeight="621.8666666666666" />
  <BiopaxRef>dbc</BiopaxRef>
  ...
</Pathway>

GPML2017:

<Pathway xmlns="http://pathvisio.org/GPML/2017" name="Acetylcholine Synthesis" organism="Homo sapiens" width="829.0515247108307" height="621.8666666666666">
  <Xref dataSource="" identifier="" /> <!-- Pathways can now have an Xref to link to WikiPathways -->
  <CitationRef citationID="dbc" /> <!-- biopax replaced by CitationRef-->
  ...
</Pathway>

---

DataNode element

GPML2013a:

  <DataNode TextLabel="PCYT1A" GraphId="a69" Type="GeneProduct">
    <Attribute Key="org.pathvisio.model.BackpageHead" Value="PCYT1A | phosphate cytidylyltransferase 1 chol..." />
    <Graphics CenterX="656.9484752891697" CenterY="200.46971608832808" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
    <Xref Database="Entrez Gene" ID="5130" />
  </DataNode>

GPML2017:

  <DataNode centerX="656.9484752891697" centerY="200.46971608832808" width="60.0" height="20.0" zOrder="32768" textLabel="PCYT1A" fontSize="10" vAlign="Middle" elementID="a69" type="GeneProduct">
    <Attribute key="org.pathvisio.model.BackpageHead" value="PCYT1A | phosphate cytidylyltransferase 1 chol..." />
    <Xref dataSource="Entrez Gene" identifier="5130" />
  </DataNode>

---

Interaction element

GPML2013a:

  <Interaction GraphId="be454">
    <Graphics ZOrder="12288" LineThickness="1.0">
      <Point X="114.71819137749738" Y="572.8666666666666" GraphRef="e42" RelX="0.0" RelY="-1.0" />
      <Point X="114.66666666666676" Y="339.86666666666673" GraphRef="dfe" RelX="0.0" RelY="1.0" ArrowHead="Arrow" />
    </Graphics>
    <Xref Database="" ID="" />
  </Interaction>

GPML2017:

  <Interaction zOrder="12288" lineThickness="1.0" elementID="be454">
    <Xref dataSource="" identifier="" />
    <Point x="114.71819137749738" y="572.8666666666666" elementID="f2ed9" elementRef="e42" relX="0.0" relY="-1.0" />
    <Point x="114.66666666666676" y="339.86666666666673" elementID="b0ef5" elementRef="dfe" relX="0.0" relY="1.0" arrowHead="Arrow" />
  </Interaction>

---

Groups

GPML2013a:

  <DataNode TextLabel="PDHA1" GraphId="ba5" Type="GeneProduct" GroupRef="dc39d">
    <Attribute Key="org.pathvisio.model.BackpageHead" Value="PDHA1 | pyruvate dehydrogenase (lipoamide) alph..." />
    <Graphics CenterX="183.33648790746582" CenterY="246.7" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
    <Xref Database="Entrez Gene" ID="5160" />
  </DataNode>
  <DataNode TextLabel="PDHA2" GraphId="a93" Type="GeneProduct" GroupRef="dc39d">
    <Attribute Key="org.pathvisio.model.BackpageHead" Value="PDHA2 | pyruvate dehydrogenase (lipoamide) alph..." />
    <Graphics CenterX="183.33648790746582" CenterY="266.7" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
    <Xref Database="Entrez Gene" ID="5161" />
  </DataNode>
  <Group GroupId="dc39d" GraphId="d74e5" />

GPML2017:

  <DataNode elementID="a93" textLabel="PDHA2" type="GeneProduct" groupRef="d74e5" centerX="183.33648790746582" centerY="266.7" width="60.0" height="20.0" zOrder="32768" fontSize="10" vAlign="Middle">
  ...
  </DataNode>
  <DataNode elementID="ba5" textLabel="PDHA1" type="GeneProduct" groupRef="d74e5" centerX="183.33648790746582" centerY="246.7" width="60.0" height="20.0" zOrder="32768" fontSize="10" vAlign="Middle">
  ...
  </DataNode>
  <Group elementID="d74e5" />