GPML2013a vs GPML2017

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Martina Summer-Kutmon edited this page Aug 14, 2017 · 22 revisions

Pathway element

GPML2013a:

<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Acetylcholine Synthesis" Organism="Homo sapiens">
  <Graphics BoardWidth="829.0515247108307" BoardHeight="621.8666666666666" />
  <BiopaxRef>dbc</BiopaxRef>
  ...
</Pathway>

GPML2017:

<Pathway xmlns="http://pathvisio.org/GPML/2017" name="Acetylcholine Synthesis" organism="Homo sapiens" width="829.0515247108307" height="621.8666666666666">
  <Xref dataSource="" identifier="" /> <!-- Pathways can now have an Xref to link to WikiPathways -->
  <CitationRef citationID="dbc" /> <!-- biopax replaced by CitationRef-->
  ...
</Pathway>

DataNode element

GPML2013a:

  <DataNode TextLabel="PCYT1A" GraphId="a69" Type="GeneProduct">
    <Attribute Key="org.pathvisio.model.BackpageHead" Value="PCYT1A | phosphate cytidylyltransferase 1 chol..." />
    <Graphics CenterX="656.9484752891697" CenterY="200.46971608832808" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
    <Xref Database="Entrez Gene" ID="5130" />
  </DataNode>

GPML2017:

  <DataNode centerX="656.9484752891697" centerY="200.46971608832808" width="60.0" height="20.0" zOrder="32768" textLabel="PCYT1A" fontSize="10" vAlign="Middle" elementID="a69" type="GeneProduct">
    <Attribute key="org.pathvisio.model.BackpageHead" value="PCYT1A | phosphate cytidylyltransferase 1 chol..." />
    <Xref dataSource="Entrez Gene" identifier="5130" />
  </DataNode>