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GPML2017

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Martina Summer-Kutmon edited this page Aug 14, 2017 · 36 revisions

We are currently working intensively on an updated GPML schema with lots of improvements and new features.

Summary

  • XML element names in upper camel case (e.g. DataNode)
  • XML attribute names in lower camel case (e.g. fillColor, dataSource)
  • Documentation of the schema definitions included in the XSD file using xsd:annotation / xsd:documentation
  • Default definitions supported by PathVisio and WikiPathways included in schema definition (e.g. type attribute for DataNode)
  • Renaming graphId to elementID
  • Graphics attributes (e.g. centerX, centerY, width) are now included in the main XML element
  • Major restructuring of citations and ontology tags (removing dependency on BioPAX)

Attributes deprecated and removed from schema

  • FontDecoration - currently not in use
  • FontStrikethru - currently not in use
  • Email attribute in Pathway element
  • Last-Modified attribute in Pathway element
  • Maintainer attribute in Pathway element

Questions

  • zOrder in LineGraphicAttributes and ShapeStyleAttributes

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