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US-5.1.1: Radial distribution function g(r)

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P0Critical — must-have for the phaseCritical — must-have for the phase

Status: Open.

#69 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.1.2: Radius of gyration Rg and end-to-end distance R_ee

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P0Critical — must-have for the phaseCritical — must-have for the phase

Status: Open.

#70 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.1.3: Structure factor S(q)

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P1Important — high valueImportant — high value

Status: Open.

#71 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.1.4: Persistence length and Kuhn length

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P1Important — high valueImportant — high value

Status: Open.

#72 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.2.1: Mean square displacement (MSD) and diffusion coefficient

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P0Critical — must-have for the phaseCritical — must-have for the phase

Status: Open.

#73 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.2.2: Autocorrelation functions (VACF, end-to-end)

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P1Important — high valueImportant — high value

Status: Open.

#74 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.3.1: Tg determination by simulation (cooling ramp)

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#75 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.3.2: Shear modulus G(t) and viscosity (Green-Kubo)

epic:analysisEpic 5.x: Analysis & post-processingEpic 5.x: Analysis & post-processing

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#76 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.4.1: CLI polysim analyze-trajectory command

epic:cliCLI commands & UXCLI commands & UX

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P1Important — high valueImportant — high value

Status: Open.

#77 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.5.1: Desktop app — analysis visualization

epic:desktopEpic 3.4: Desktop applicationEpic 3.4: Desktop application

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P1Important — high valueImportant — high value

Status: Open.

#78 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026

US-5.5.2: Desktop app — real-time simulation monitoring

epic:desktopEpic 3.4: Desktop applicationEpic 3.4: Desktop application

phase:5Phase 5: Analysis (v2.1+)Phase 5: Analysis (v2.1+)

priority:P2Nice-to-have — can be deferredNice-to-have — can be deferred

Status: Open.

#79 In Peariforme/polysim;

· Peariforme opened on Mar 4, 2026