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TileDB backend fails if the database subfolders already exist #39
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Traceback (most recent call last):
File "/home/tsalo/micromamba/envs/maio/bin/modelarrayio", line 6, in <module>
sys.exit(main())
^^^^^^
File "/mnt/c/Users/tsalo/Documents/linc/ModelArrayIO/src/modelarrayio/cli/main.py", line 66, in main
return options.func(**args)
^^^^^^^^^^^^^^^^^^^^
File "/mnt/c/Users/tsalo/Documents/linc/ModelArrayIO/src/modelarrayio/cli/cifti_to_h5.py", line 170, in cifti_to_h5_main
return cifti_to_h5(**kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/mnt/c/Users/tsalo/Documents/linc/ModelArrayIO/src/modelarrayio/cli/cifti_to_h5.py", line 162, in cifti_to_h5
future.result()
File "/home/tsalo/micromamba/envs/maio/lib/python3.12/concurrent/futures/_base.py", line 449, in result
return self.__get_result()
^^^^^^^^^^^^^^^^^^^
File "/home/tsalo/micromamba/envs/maio/lib/python3.12/concurrent/futures/_base.py", line 401, in __get_result
raise self._exception
File "/home/tsalo/micromamba/envs/maio/lib/python3.12/concurrent/futures/thread.py", line 59, in run
result = self.fn(*self.args, **self.kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/mnt/c/Users/tsalo/Documents/linc/ModelArrayIO/src/modelarrayio/cli/cifti_to_h5.py", line 127, in _process_scalar_job
cli_utils.write_tiledb_scalar_matrices(
File "/mnt/c/Users/tsalo/Documents/linc/ModelArrayIO/src/modelarrayio/cli/utils.py", line 112, in write_tiledb_scalar_matrices
tiledb_storage.create_empty_scalar_matrix_array(
File "/mnt/c/Users/tsalo/Documents/linc/ModelArrayIO/src/modelarrayio/storage/tiledb_storage.py", line 268, in create_empty_scalar_matrix_array
tiledb.Array.create(uri, schema)
File "/home/tsalo/micromamba/envs/maio/lib/python3.12/site-packages/tiledb/array.py", line 451, in create
lt.Array._create(ctx, uri, schema)
tiledb.libtiledb.TileDBError: Array: Cannot create array; Array 'file:///mnt/c/Users/tsalo/Documents/datasets/modelarray/modelarray-test-data/cifti-data/tiledb_databases/format-long_ext-dscalar_cohort.tdb/scalars/reho/values' already exists
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