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  • chore: final data update before release

    @whaleyr whaleyr committed Sep 27, 2021
    a068771

  • fix: fold pharmcat_positions.vcf into DataManager, remove pharmcat_intervals.txt

    @markwoon markwoon committed Sep 27, 2021
    210508a

  • docs: tweak grammar

    @markwoon markwoon committed Sep 26, 2021
    49e2cc2

  • Doc: add the description of the `--keep_intermediate_files` function

    @BinglanLi BinglanLi committed Sep 17, 2021
    0a5bcf6

  • docs: fix NUDT15 example in pharmcat.example.vcf

    @whaleyr whaleyr committed Aug 26, 2021
    a794127

  • fix: remove references to unneeded pharmcat.properties file

    @whaleyr whaleyr committed Aug 6, 2021
    32b8432

  • docs: adjust Java requirement

    @whaleyr whaleyr committed Aug 6, 2021
    540eb52

  • docs: adjust gradle and JDK text

    @whaleyr whaleyr committed Aug 6, 2021
    b1a34d4

  • docs: adjust the gradle command to use the gradle wrapper

    @whaleyr whaleyr committed Aug 6, 2021
    c43827e

  • docs: update Java requirement documentation

    @whaleyr whaleyr committed Aug 2, 2021
    b4e8bdd

  • doc: guide users to use the manually fixed PGx VCF

    @BinglanLi BinglanLi committed Jul 13, 2021
    90248e7

  • doc: explain the new feature `--input_list`

    @BinglanLi BinglanLi committed Jul 9, 2021
    844d835

  • docs: update documentation about Determining Alleles

    @whaleyr whaleyr committed Jul 8, 2021
    ebe2012

  • doc: update wiki for bcftools/tabix-v1.12

    @BinglanLi BinglanLi committed Jul 7, 2021
    3dcb771

  • update: reflect the cyvcf removal in the related docs

    @BinglanLi BinglanLi committed Jun 30, 2021
    9d07b88

  • doc: description of the function to select a subset of samples

    @BinglanLi BinglanLi committed Jun 14, 2021
    0b8dee4

  • docs: doc cleanup

    @markwoon markwoon committed May 25, 2021
    c73887f

  • docs: fix normalization command

    @BinglanLi BinglanLi committed May 25, 2021
    e540588

  • docs: don't use blockquote

    @markwoon markwoon committed May 25, 2021
    0f8ff2e

  • docs: add warning emoji :sparkle:

    @markwoon markwoon committed May 25, 2021
    d97223f

  • docs: more VCF doc tweaks

    @markwoon markwoon committed May 25, 2021
    603b4a1

  • docs: tweak docs to remind people to read VCF requirements

    @markwoon markwoon committed May 25, 2021
    bc49c79

  • doc: update the instruction and command for the preprocessing tool

    @BinglanLi BinglanLi committed May 24, 2021
    9410e72

  • docs: update alignment doc

    @markwoon markwoon committed May 24, 2021
    e52c994

  • docs: update vcf docs

    @markwoon markwoon committed May 24, 2021
    0538dd1

  • Updated Preparing VCF Files (markdown)

    @BinglanLi BinglanLi committed May 24, 2021
    e80d867

  • doc: update the state-of-the-art solution

    @BinglanLi BinglanLi committed May 24, 2021
    26d566e

  • docs: combine FAQ answers

    @whaleyr whaleyr committed May 24, 2021
    6d0dc1e

  • Updated FAQs (markdown)

    @whaleyr whaleyr committed May 24, 2021
    1af4165

  • docs: improve docs

    @markwoon markwoon committed May 24, 2021
    b15aa91