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Update flowchart
Updated Preparing VCF Files (markdown)
Update CFTR position data * the rs199826652 variant was removed from the CFTR definition in favor of rs113993960 * change all CFTR test cases to refer to rs113993960 with corrected positions and alleles
Updated Running PharmCAT (markdown)
Update documentation.
Update information about building PharmCAT * does not work with JDK9 ... yet
Update flowchart.
Update guideline links.
Add a page for determining alleles
Updated preparing VCF file instructions with Docker instructions.
More details.
Add Java 1.8 requirement.
Tweak example.
Add note about JDK
More fixes.
Fix missing rs5 example's gene definition table.
Fix examples. Again.
Tweak text.
Remove osbolete file.
Improve flow.
Update flowchart files.
Document advanced NamedAlleleMatcher usage.
Fix *3 definition. Again.
Fix *3 definition.