msbuddy is developed for molecular formula analysis in MS-based small molecule studies.
This is a nextflow workflow for msbuddy (ver 0.3.7) deployment on GNPS2.
Within this nextflow, we allow two file formats: mgf files and csv files (USI list).
See demo files here.
In order to deploy, we have a set of deployment tools that will enable deployment to the various gnps systems. To run the deployment, use the following commands from the deploy_gnps2 folder.
make deploy-prod
You might need to checkout the module, do this by running
git submodule init
git submodule update