Hi,
Thank you very much for developing basecounts tool.
As the issue title describes, I need to obtain a read name list (or read fastq file) containing indels on a specific chromosome position. Could basecounts give such output?
To clarify, I want to exclude reads with only SNVs but not indels on the chromosome position. However, the tools I have found till now (e.g., ASCIIGenome) can only find reads containing SNVs and indels as a pool, but cannot separate reads containing SNVs and reads containing indels.
Many thanks.
Yingzi