Skip to content

auto updates #6374

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
wyli merged 4 commits into from
Apr 17, 2023
Merged

auto updates #6374

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
0974ee2
[MONAI] code formatting
monai-bot Apr 17, 2023
ca0c9f2
workaround #6377
wyli Apr 17, 2023
b8f0ca8
updae
wyli Apr 17, 2023
6477e7d
update
wyli Apr 17, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 1 addition & 3 deletions .github/workflows/pythonapp-gpu.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -103,12 +103,10 @@ jobs:
python -m pip install --upgrade pip wheel
# fixes preinstalled ruamel_yaml error from the docker image
rm -rf $(python -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())")/ruamel*
rm -rf $(python -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())")/llvmlite* #6377
python -m pip install ${{ matrix.pytorch }}
python -m pip install -r requirements-dev.txt
python -m pip list
DRIVER_VERSION=$(cat /proc/driver/nvidia/version | head -1 | awk -F' ' '{print $8}')
ls -ltr /usr/lib/x86_64-linux-gnu/libcuda* && ln -fs /usr/lib/x86_64-linux-gnu/libcuda.so.$DRIVER_VERSION /usr/lib/x86_64-linux-gnu/libcuda.so.1 || true
ls -ltr /usr/lib64/libcuda* && ln -fs /usr/lib64/libcuda.so.$DRIVER_VERSION /usr/lib64/libcuda.so.1 || true
- name: Run quick tests (GPU)
if: github.event.pull_request.merged != true
run: |
Expand Down
2 changes: 1 addition & 1 deletion monai/apps/auto3dseg/ensemble_builder.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -94,7 +94,7 @@ def set_infer_files(self, dataroot: str, data_list_or_path: str | list, data_key
datalist = ConfigParser.load_config_file(data_list_or_path)
if data_key in datalist:
self.infer_files, _ = datafold_read(datalist=datalist, basedir=dataroot, fold=-1, key=data_key)
elif hasattr(self, "rank") and self.rank == 0: # type: ignore
elif hasattr(self, "rank") and self.rank == 0:
logger.info(f"Datalist file has no testing key - {data_key}. No data for inference is specified")

else:
Expand Down