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@KumoLiu KumoLiu commented Aug 8, 2023

Fixes # .

Description

This PR is used to add unit tests on the following bundles:

  • endoscopic_tool_segmentation
  • pathology_nuclei_segmentation_classification
  • wholeBody_ct_segmentation
  • pathology_nuclei_classification
  • pathology_nuclick_annotation
  • lung_nodule_ct_detection

Status

Ready/Work in progress/Hold

Please ensure all the checkboxes:

  • Codeformat tests passed locally by running ./runtests.sh --codeformat.
  • In-line docstrings updated.
  • Update version and changelog in metadata.json if changing an existing bundle.
  • Please ensure the naming rules in config files meet our requirements (please refer to: CONTRIBUTING.md).
  • Ensure versions of packages such as monai, pytorch and numpy are correct in metadata.json.
  • Descriptions should be consistent with the content, such as eval_metrics of the provided weights and TorchScript modules.
  • Files larger than 25MB are excluded and replaced by providing download links in large_file.yml.
  • Avoid using path that contains personal information within config files (such as use /home/your_name/ for "bundle_root").

KumoLiu added 13 commits August 8, 2023 16:59
`pathology_nuclei_segmentation_classification`

Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
`endoscopic_tool_segmentation_dist`

Signed-off-by: KumoLiu <yunl@nvidia.com>
`endoscopic_tool_segmentation`

Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
`wholeBody_ct_segmentation`

Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
pathology_nuclei_classification

Signed-off-by: KumoLiu <yunl@nvidia.com>
pathology_nuclick_annotation

Signed-off-by: KumoLiu <yunl@nvidia.com>
lung_nodule_ct_detection

Signed-off-by: KumoLiu <yunl@nvidia.com>
@KumoLiu KumoLiu marked this pull request as ready for review August 28, 2023 10:22
Signed-off-by: KumoLiu <yunl@nvidia.com>
@wyli
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wyli commented Aug 28, 2023

/build

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Thanks, it looks good to me. cc @yiheng-wang-nv please help confirm..

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Thanks @KumoLiu , could you also temporarily modify bundles that added unit tests in order to trigger the tests?
Then, revert them back and this PR can merge.

Signed-off-by: KumoLiu <yunl@nvidia.com>
@yiheng-wang-nv
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can refer to:
fcd5a7b

KumoLiu and others added 3 commits August 29, 2023 12:32
Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
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need sometime to figure how to solve the resource issue of github action.

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KumoLiu commented Aug 29, 2023

need sometime to figure how to solve the resource issue of github action.

I will help take a look at this one.

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/build

KumoLiu and others added 3 commits August 29, 2023 19:21
pathology_nuclei_segmentation_classification

Signed-off-by: KumoLiu <yunl@nvidia.com>
@yiheng-wang-nv
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/build

Signed-off-by: KumoLiu <yunl@nvidia.com>
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/build

KumoLiu and others added 7 commits September 4, 2023 14:41
Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
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/build

Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: KumoLiu <yunl@nvidia.com>
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/build

@yiheng-wang-nv yiheng-wang-nv merged commit d813727 into Project-MONAI:dev Sep 6, 2023
@KumoLiu KumoLiu deleted the add-unittests branch September 6, 2023 07:30
yiheng-wang-nv added a commit to yiheng-wang-nv/model-zoo that referenced this pull request Jul 29, 2024
Fixes # .

### Description

This PR is used to add unit tests on the following bundles:
- [x] endoscopic_tool_segmentation
- [x] pathology_nuclei_segmentation_classification
- [x] wholeBody_ct_segmentation
- [x] pathology_nuclei_classification
- [x] pathology_nuclick_annotation
- [x] lung_nodule_ct_detection

### Status
**Ready/Work in progress/Hold**

### Please ensure all the checkboxes:
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Codeformat tests passed locally by running `./runtests.sh
--codeformat`.
- [ ] In-line docstrings updated.
- [ ] Update `version` and `changelog` in `metadata.json` if changing an
existing bundle.
- [ ] Please ensure the naming rules in config files meet our
requirements (please refer to: `CONTRIBUTING.md`).
- [ ] Ensure versions of packages such as `monai`, `pytorch` and `numpy`
are correct in `metadata.json`.
- [ ] Descriptions should be consistent with the content, such as
`eval_metrics` of the provided weights and TorchScript modules.
- [ ] Files larger than 25MB are excluded and replaced by providing
download links in `large_file.yml`.
- [ ] Avoid using path that contains personal information within config
files (such as use `/home/your_name/` for `"bundle_root"`).

---------

Signed-off-by: KumoLiu <yunl@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Co-authored-by: Yiheng Wang <vennw@nvidia.com>
Co-authored-by: Yiheng Wang <68361391+yiheng-wang-nv@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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3 participants