Add MONAI Label E2E Tutorial Series

[tangy5]

Hi MONAI Label team @SachidanandAlle @diazandr3s @finalelement @Nic-Ma:

Let's start our MONAILabel tutorial series.

I've made several E2E tutorials for all sample apps with some end tasks.

We will put all MONAI Label related tutorials in this repo.

Some thoughts from my side:

• In the future, there will be more E2E tutorials for end-users or developers. E.g., OHIF, Orthanc, DSA, Interactive labeling (DeepEdit), Detection...etc....Whenever there is a new viewer/plugin/datastore/task/special feature, we can make a tutorial.
• The purpose for these tutorials is to provide e2e experience for new users or developers.
• I will create a doc page in the MONAILabel repo to link these tutorials.
• If any customer/users/collaborators asks question on viewer/plugin/server installation, setup question, we can help them and refer materials here.

Let me know if you have any thoughts or suggestions for these tutorials.

Cheers.

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[mingxin-zheng]

Hi @tangy5
If 3D Slicer doesn't work in Mac, could you add a note in the notebooks? Thanks!

[mingxin-zheng]

Also I noticed most other notebooks do not use the index (such as 1.1 and 1.1.1) in the titles. I would propose that we can unify so that one day if we need to replace/remove something in all notebooks, it can be easily done in a text editor.

[tangy5]

Hi @tangy5 If 3D Slicer doesn't work in Mac, could you add a note in the notebooks? Thanks!

Users can use 3D Slicer on Mac, but MONAI Label can't, users can setup MONAI Label server with Linux then use 3D Slicer for annotation on Mac. Just with a host/port pass. That's OK.

[tangy5]

Also I noticed most other notebooks do not use the index (such as 1.1 and 1.1.1) in the titles. I would propose that we can unify so that one day if we need to replace/remove something in all notebooks, it can be easily done in a text editor.

Emm, let's think about this, MONAI Label tutorials are not fully notebook executable experience, most parts are markdown where users want to read. Like a book chapter. Maybe index is better for these markdown texts.

[tangy5]

Hi @wyli , I guess some checks are canceled due to some configs of notebooks, these MONAI Label tutorials only has bash command, no training/inference executable python codes. Do you have some hints how to pass the premerge-notebooks check?
Thank you so much!

[tangy5]

Convert to Draft for now.
Waiting for decisions on how to handle consistency between Toolkit verison and Github version.

[wyli]

thanks, it looks good to me. for the readme file, perhaps we can include more info about

• minimal hardware requirements, operating system?
• where to ask monailabel questions/create bug reports?
• references of monailabel paper?
• the URLs for the 3rd party software?