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fix Error in MAISI #1967

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Merged
KumoLiu merged 2 commits into from
Apr 3, 2025
Merged

fix Error in MAISI #1967

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b3c589b
fix Error in MAISI
Can-Zhao Apr 2, 2025
b32390c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 2, 2025
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2 changes: 1 addition & 1 deletion generation/maisi/maisi_train_vae_tutorial.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -326,7 +326,7 @@
}
],
"source": [
"config_file = \"./configs/config_maisi.json\"\n",
"config_file = \"./configs/config_maisi3d-rflow.json\"\n",
"config_dict = json.load(open(config_file, \"r\"))\n",
"for k, v in config_dict.items():\n",
" setattr(args, k, v)\n",
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14 changes: 7 additions & 7 deletions generation/maisi/scripts/augmentation.py
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Expand Up @@ -60,7 +60,7 @@ def dilate3d(input_tensor, erosion=3):
return output.squeeze(0).squeeze(0)


def augmentation_tumor_bone(pt_nda, output_size, random_seed):
def augmentation_tumor_bone(pt_nda, output_size, random_seed=None):
volume = pt_nda.squeeze(0)
real_l_volume_ = torch.zeros_like(volume)
real_l_volume_[volume == 128] = 1
Expand Down Expand Up @@ -113,7 +113,7 @@ def augmentation_tumor_bone(pt_nda, output_size, random_seed):
return pt_nda


def augmentation_tumor_liver(pt_nda, output_size, random_seed):
def augmentation_tumor_liver(pt_nda, output_size, random_seed=None):
volume = pt_nda.squeeze(0)
real_l_volume_ = torch.zeros_like(volume)
real_l_volume_[volume == 1] = 1
Expand Down Expand Up @@ -163,7 +163,7 @@ def augmentation_tumor_liver(pt_nda, output_size, random_seed):
return pt_nda


def augmentation_tumor_lung(pt_nda, output_size, random_seed):
def augmentation_tumor_lung(pt_nda, output_size, random_seed=None):
volume = pt_nda.squeeze(0)
real_l_volume_ = torch.zeros_like(volume)
real_l_volume_[volume == 23] = 1
Expand Down Expand Up @@ -227,7 +227,7 @@ def augmentation_tumor_lung(pt_nda, output_size, random_seed):
return pt_nda


def augmentation_tumor_pancreas(pt_nda, output_size, random_seed):
def augmentation_tumor_pancreas(pt_nda, output_size, random_seed=None):
volume = pt_nda.squeeze(0)
real_l_volume_ = torch.zeros_like(volume)
real_l_volume_[volume == 4] = 1
Expand Down Expand Up @@ -277,7 +277,7 @@ def augmentation_tumor_pancreas(pt_nda, output_size, random_seed):
return pt_nda


def augmentation_tumor_colon(pt_nda, output_size, random_seed):
def augmentation_tumor_colon(pt_nda, output_size, random_seed=None):
volume = pt_nda.squeeze(0)
real_l_volume_ = torch.zeros_like(volume)
real_l_volume_[volume == 27] = 1
Expand Down Expand Up @@ -335,7 +335,7 @@ def augmentation_tumor_colon(pt_nda, output_size, random_seed):
return pt_nda


def augmentation_body(pt_nda, random_seed):
def augmentation_body(pt_nda, random_seed=None):
volume = pt_nda.squeeze(0)

zoom = RandZoom(min_zoom=0.99, max_zoom=1.01, mode="nearest", align_corners=None, prob=1.0)
Expand All @@ -347,7 +347,7 @@ def augmentation_body(pt_nda, random_seed):
return pt_nda


def augmentation(pt_nda, output_size, random_seed):
def augmentation(pt_nda, output_size, random_seed=None):
label_list = torch.unique(pt_nda)
label_list = list(label_list.cpu().numpy())

Expand Down
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