Skip to content

688 fixes download links #689

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
wyli merged 3 commits into from
May 9, 2022
Merged

688 fixes download links #689

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
733107e
tcia link
wyli May 5, 2022
5156a96
update deepgrow links
wyli May 5, 2022
961db7b
remove unused import
wyli May 5, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 6 additions & 6 deletions deepgrow/ignite/inference.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@
"metadata": {},
"outputs": [],
"source": [
"!python -c \"import monai\" || pip install -q \"monai-weekly[gdown, tqdm]\""
"!python -c \"import monai\" || pip install -q \"monai-weekly[tqdm]\""
]
},
{
Expand All @@ -34,13 +34,13 @@
"metadata": {},
"outputs": [],
"source": [
"import gdown\n",
"import os\n",
"import matplotlib.pyplot as plt\n",
"import numpy as np\n",
"import torch\n",
"from torch import jit\n",
"\n",
"import monai\n",
"from monai.apps.deepgrow.transforms import (\n",
" AddGuidanceFromPointsd,\n",
" AddGuidanceSignald,\n",
Expand Down Expand Up @@ -145,16 +145,16 @@
"source": [
"# Download data and model\n",
"\n",
"resource = \"https://drive.google.com/uc?id=1cIlDXWx4pEFpldoIXMEe-5JeaOxzB05Z\"\n",
"resource = \"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/_image.nii.gz\"\n",
"dst = \"_image.nii.gz\"\n",
"\n",
"if not os.path.exists(dst):\n",
" gdown.download(resource, dst, quiet=False)\n",
" monai.apps.download_url(resource, dst)\n",
"\n",
"resource = \"https://drive.google.com/uc?id=1_J4qj-JRqQc9g8SGegq63Z_wq6gqgLLg\"\n",
"resource = \"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/deepgrow_2d.ts\"\n",
"dst = \"deepgrow_2d.ts\"\n",
"if not os.path.exists(dst):\n",
" gdown.download(resource, dst, quiet=False)"
" monai.apps.download_url(resource, dst)"
]
},
{
Expand Down
4 changes: 2 additions & 2 deletions modules/tcia_csv_processing.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -244,7 +244,7 @@
],
"source": [
"dataset = TCIADataset(\n",
" url=\"https://drive.google.com/uc?id=1HQ7BZvBr1edmi8HIwdG5KBweXWms5Uzk\",\n",
" url=\"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/ISPY1_Combined.csv\",\n",
" filename=os.path.join(root_dir, \"ISPY1_Combined.csv\"),\n",
" img_dir=os.path.join(root_dir, \"tcia_images\"),\n",
" row_indices=[[0, 8]],\n",
Expand Down Expand Up @@ -447,7 +447,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.10"
"version": "3.8.12"
}
},
"nbformat": 4,
Expand Down