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@ahatamiz ahatamiz commented Jun 9, 2022

Signed-off-by: ahatamizadeh ahatamizadeh@nvidia.com

Description

This PR adds the tutorial for Swin UNETR [1] model using BRATS21 segmentation challenge data.

[1]: Hatamizadeh, Ali, Vishwesh Nath, Yucheng Tang, Dong Yang, Holger Roth, and Daguang Xu. "Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Images." arXiv preprint arXiv:2201.01266 (2022).

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  • Notebook runs automatically ./runner [-p <regex_pattern>]

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
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ahatamiz added 7 commits June 9, 2022 07:09
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
@Nic-Ma Nic-Ma requested a review from yiheng-wang-nv June 13, 2022 04:01
Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
@ahatamiz ahatamiz force-pushed the swin_unetr_brats21_v1 branch from 63af802 to 63a26ce Compare June 13, 2022 06:33
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Nic-Ma commented Jun 13, 2022

Hi @ahatamiz ,

Please update this line to skip the check:
https://github.com/Project-MONAI/tutorials/blob/main/runner.sh#L66
Maybe just change *unetr_btcv* to *unetr_*?
CC @wyli

Thanks.

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
@ahatamiz ahatamiz force-pushed the swin_unetr_brats21_v1 branch from fde7fc0 to 20931fc Compare June 13, 2022 06:55
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ahatamiz commented Jun 13, 2022

unetr_

Hi @ahatamiz ,

Please update this line to skip the check: https://github.com/Project-MONAI/tutorials/blob/main/runner.sh#L66 Maybe just change *unetr_btcv* to *unetr_*? CC @wyli

Thanks.

Thanks @Nic-Ma. Sure, already addressed.

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@wyli @yiheng-wang-nv Do you have any other comments?

Thanks.

@Nic-Ma Nic-Ma merged commit 56e7e87 into Project-MONAI:main Jun 13, 2022
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

* add swin_unetr brats21 tutorial

Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>
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3 participants