Skip to content

Conversation

@binliunls
Copy link
Contributor

Signed-off-by: binliu binliu@nvidia.com

Fixes #960 .

Description

Add a tutorial of endoscopy inbody classification, in order to detect whether the endoscopy camera is inside patients' body. This may help to protect privacy of patients during surgical operation.

Checks

  • Notebook runs automatically ./runner [-p <regex_pattern>]

@review-notebook-app
Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

binliunls and others added 10 commits September 29, 2022 15:52
Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
@binliunls binliunls marked this pull request as ready for review September 30, 2022 07:44
@binliunls binliunls changed the title [WIP] 960-endoscopy-inbody-classification-tutorial 960-endoscopy-inbody-classification-tutorial Sep 30, 2022
@binliunls binliunls requested review from Nic-Ma and wyli September 30, 2022 07:44
@binliunls
Copy link
Contributor Author

Hi @Nic-Ma @wyli :
Could you please help me review this endoscopy inbody classification tutorial.
Thanks,
BIn

Signed-off-by: binliu <binliu@nvidia.com>
Copy link
Contributor

@Nic-Ma Nic-Ma left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pending on the legal verification.

Thanks.

@jin-nvidia
Copy link

Suggestion: After the printout print(f"There are total {len(sample_list)} samples") to also add printouts of how many are assigned to the training set and how many are assigned to the validation set

Signed-off-by: binliu <binliu@nvidia.com>
Signed-off-by: binliu <binliu@nvidia.com>
@Nic-Ma
Copy link
Contributor

Nic-Ma commented Oct 14, 2022

Could you please help update the endoscopy to endoscopic in the notebook tiple and README?

Thanks in adavnce.

Signed-off-by: binliu <binliu@nvidia.com>
Copy link
Contributor

@wyli wyli left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I'll move the testing data to github storage

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli wyli enabled auto-merge (squash) October 14, 2022 09:01
@wyli wyli merged commit 72728b6 into Project-MONAI:main Oct 14, 2022
@binliunls binliunls deleted the 960-endoscopy-inbody-classification-tutorial branch October 28, 2022 05:52
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
Signed-off-by: binliu <binliu@nvidia.com>

Fixes Project-MONAI#960  .

### Description
Add a tutorial of endoscopy inbody classification, in order to detect
whether the endoscopy camera is inside patients' body. This may help to
protect privacy of patients during surgical operation.

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Notebook runs automatically `./runner [-p <regex_pattern>]`

Signed-off-by: binliu <binliu@nvidia.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Add tutorial notebook for endoscopy inbody classification

4 participants