This repository stores the RBA models of:
- Arabidopsis thaliana Col-0 generic cell
- Arabidopsis thaliana Col-0 with temperature dependence
- Bacillus subtilis 168 WT strain
- Escherichia coli K12 WT strain
- Escherichia coli K12 strain fixing CO2
- Escherichia coli K12 with temperature dependence
- Ralstonia eutropha H16 (also known as Cupriavidus necator)
- Vibrio natriegens
All models have been created using RBApy (https://doi.org/10.1016/j.ymben.2019.06.001).
Models of A. thaliana B. subtilis and E. coli were developed by INRAE, please cite (https://doi.org/10.1016/j.ymben.2019.06.001) when using these models.
The model of Ralstonia eutropha was developed by M. Jahn (https://github.com/m-jahn). Please cite (https://doi.org/10.7554/eLife.69019) when using this model.
The model of Vibrio natriegens was developed by L. Coppens (https://github.com/LucasCoppens/). Please cite (https://doi.org/10.15252/msb.202110523) when using this model.
Please note that in the models for Ralstonia eutropha and Vibrio natriegens the actual rba model (according to the rbaml2 standard) is located in a subdirectory called model.