Skip to content

Seaborn dependency issue #92

@gnaprs

Description

@gnaprs

First of all, thank you for the very interesting package! I’ve been exploring pimms-learn for some single-cell proteomics workflows and ran into a dependency conflict when installing it in the same environment as scanpy.

ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
pimms-learn 0.5.0 requires seaborn<0.13, but you have seaborn 0.13.0 which is incompatible.
scanpy 1.10.1 requires seaborn>=0.13, but you have seaborn 0.12.2 which is incompatible.

I can bypass the conflict by ignoring pip’s warning, installing pimms-learn afterwards, and downgrading seaborn to 0.12.2. However, I’m not sure whether this impacts any of scanpy’s plotting or preprocessing functions that may expect seaborn ≥ 0.13.

Would it be possible to update the package dependencies to support the latest seaborn release? This would make it easier to install pimms-learn alongside modern single-cell analysis tools like scanpy.

Thank you for your time and for developing this package!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions