Adding Austin 3subpop plus updating parameters#21

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RemyFP merged 29 commits into

RemyFP:mainfrom

Apr 23, 2026

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SusanPtak commented Apr 23, 2026

See flu_instances/What changed.txt for full list of changes and notes on parameters.
TL;DR: Updated parameters and code for Austin 2 subpop model
Added parameters and code for Austin 3 subpop model

SusanPtak added 29 commits

April 22, 2026 21:42


          Change transition_type from 'binom_deterministic' to 'binom'

4b5f7b0

So that different replications are different

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/examples/flu_demo_2popAustin_2023_2024.ipynb

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No longer needed.  Replaced by flu_demo_2popAustin, which can run either season. 

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/examples/flu_demo_2popAustin_2024_2025.ipynb

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No longer needed.  Replaced by flu_demo_2popAustin, which can run either season. 

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Adding updated code

Updated 2pop Austin to run both seasons, plus bit of other functionality
Created 3 pop Austin

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/Hosp_Austin.xlsx

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Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/common_subpop_param…

fb2c2fb

…s.json

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/daily_vaccines_East…

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….csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/daily_vaccines_West…

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….csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/init_vals_east.json

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Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/init_vals_west.json

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Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/school_work_calenda…

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…r_austin_East.csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/school_work_calenda…

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…r_austin_West.csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/simulation_settings…

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….json

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Updating parameters

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Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files directory

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No longer needed

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2023_2024/texas_input_files_r…

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…eadme.md

No longer needed

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/Hosp_Austin.xlsx

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Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/common_subpop_param…

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…s.json

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/daily_vaccines_East…

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….csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/daily_vaccines_West…

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….csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/init_vals_east.json

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Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/init_vals_west.json

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Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/school_work_calenda…

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…r_austin_East.csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/school_work_calenda…

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…r_austin_West.csv

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/simulation_settings…

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….json

Updating

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Delete flu_instances/austin_input_files_2024_2025/texas_input_files_r…

…eadme.md

No longer needed

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Updating parameters

f6f3ca3

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Adding Austin 3subpop

c33a809

Signed-off-by: SusanPtak <110263287+SusanPtak@users.noreply.github.com>


          Merge pull request #2 from SusanPtak/Adding-Austin-3subpop-plus-updat…

d02d07a

…e-parameters

Adding austin 3subpop plus update parameters

RemyFP approved these changes

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RemyFP left a comment

looks good

RemyFP merged commit e8e8bbd into RemyFP:main

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