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Austin 2 populations parameter updates #3

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Merged
RemyFP merged 1 commit into from
Jan 15, 2026
Merged

Austin 2 populations parameter updates #3

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1,474 changes: 0 additions & 1,474 deletions flu_demo_2popAustin.ipynb
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Binary file added flu_instances/austin_input_files/Hosp_Austin.xlsx
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1,097 changes: 1,097 additions & 0 deletions flu_instances/austin_input_files/absolute_humidity_austin.csv
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1,099 changes: 0 additions & 1,099 deletions flu_instances/austin_input_files/absolute_humidity_austin_2023_2024.csv
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22 changes: 11 additions & 11 deletions flu_instances/austin_input_files/common_subpop_params.json
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Original file line number Diff line number Diff line change
@@ -1,27 +1,27 @@
{
"num_age_groups":5,
"num_risk_groups":1,
"beta_baseline": 0.07,
"humidity_impact": 0.0119,
"beta_baseline": 0.08,
"humidity_impact": 0.0119,
"inf_induced_saturation": 0.7,
"inf_induced_immune_wane": 0.01,
"vax_induced_saturation": 0.2,
"vax_induced_immune_wane": [[0.0025],[0.0025],[0.0025],[0.0025],[0.0036]],
"vax_induced_immune_wane": [[0.0025],[0.0025],[0.0025],[0.0025],[0.0036]],
"inf_induced_inf_risk_reduce": 0.80,
"inf_induced_hosp_risk_reduce": 0.87,
"inf_induced_death_risk_reduce": 0.0,
"vax_induced_inf_risk_reduce": [[0.57],[0.57],[0.30],[0.30],[0.35]],
"vax_induced_hosp_risk_reduce": [[0.64],[0.64],[0.45],[0.45],[0.36]],
"vax_induced_inf_risk_reduce": [[0.52],[0.52],[0.43],[0.43],[0.10]],
"vax_induced_hosp_risk_reduce": [[0.63],[0.63],[0.51],[0.51],[0.57]],
"vax_induced_death_risk_reduce": 0.0,
"R_to_S_rate": 0.02,
"E_to_I_rate": 1.43,
"IP_to_IS_rate": 1.11,
"ISH_to_H_rate": 0.27,
"ISR_to_R_rate": 0.5,
"IA_to_R_rate": 0.43,
"HR_to_R_rate": 0.17,
"HR_to_R_rate": [[0.21],[0.21],[0.16],[0.15],[0.15]],
"HD_to_D_rate": 0.17,
"E_to_IA_prop": [[0.25],[0.25],[0.3],[0.3],[0.3]],
"E_to_IA_prop": [[0.25],[0.25],[0.3],[0.3],[0.3]],
"IP_relative_inf": 2.22,
"IA_relative_inf": 1.03,
"relative_suscept":
Expand All @@ -33,11 +33,11 @@
"ISH_to_HD_prop": [[0.0132],
[0.0099],
[0.0295],
[0.0594],
[0.0595],
[0.0802]],
"IP_to_ISH_prop": [[0.00697],
[0.00274],
[0.00561],
"IP_to_ISH_prop": [[0.0070],
[0.0027],
[0.0056],
[0.0106],
[0.0909]],

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614 changes: 307 additions & 307 deletions flu_instances/austin_input_files/daily_vaccines_east.csv
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614 changes: 307 additions & 307 deletions flu_instances/austin_input_files/daily_vaccines_west.csv
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20 changes: 10 additions & 10 deletions flu_instances/austin_input_files/init_vals_east.json
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Original file line number Diff line number Diff line change
Expand Up @@ -51,15 +51,15 @@
[0],
[0]],
"M":
[[0.093],
[0.093],
[0.089],
[0.089],
[0.039]],
[[0.1],
[0.1],
[0.06],
[0.08],
[0.04]],
"MV":
[[0.228],
[0.228],
[0.228],
[0.228],
[0.228]]
[[0.205],
[0.208],
[0.085],
[0.091],
[0.172]]
}
26 changes: 13 additions & 13 deletions flu_instances/austin_input_files/init_vals_west.json
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Expand Up @@ -5,9 +5,9 @@
[342610],
[117000],
[83514]],
"E": [[5],
[5],
[50],
"E": [[0],
[0],
[30],
[0],
[0]],
"IP": [[0],
Expand Down Expand Up @@ -51,15 +51,15 @@
[0],
[0]],
"M":
[[0.093],
[0.093],
[0.089],
[0.089],
[0.039]],
[[0.1],
[0.1],
[0.06],
[0.08],
[0.04]],
"MV":
[[0.278],
[0.278],
[0.278],
[0.278],
[0.278]]
[[0.238],
[0.242],
[0.098],
[0.106],
[0.200]]
}
4 changes: 2 additions & 2 deletions flu_instances/austin_input_files/mixing_params.json
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@@ -1,6 +1,6 @@
{
"num_locations": 2,
"travel_proportions":
[[0.93,0.07],
[0.004,0.996]]
[[0.98,0.02],
[0.09,0.91]]
}
16 changes: 8 additions & 8 deletions flu_instances/austin_input_files/mobility_modifier.csv
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Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
0,day_of_week,mobility_modifier
1,Monday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
2,Tuesday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
3,Wednesday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
4,Thursday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
5,Friday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
6,Saturday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
7,Sunday,"[[0.85],[0.85],[1.04],[1.06],[0.86]]"
0,day_of_week,mobility_modifier
1,Monday,"[[0.94],[0.94],[1.05],[1.07],[0.93]]"
2,Tuesday,"[[0.94],[0.94],[1.05],[1.07],[0.93]]"
3,Wednesday,"[[0.94],[0.94],[1.05],[1.07],[0.93]]"
4,Thursday,"[[0.94],[0.94],[1.05],[1.07],[0.93]]"
5,Friday,"[[0.94],[0.94],[1.05],[1.07],[0.93]]"
6,Saturday,"[[0.78],[0.78],[1.16],[1.16],[0.79]]"
7,Sunday,"[[0.61],[0.61],[0.83],[0.89],[0.68]]"
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