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Welcome to the official wiki for the workshop Snakemake for reproducible analyses designed by Amina Echchiki and Romain Feron.

In this wiki, you will find all the information presented during the workshop, sometimes with additional details and references to the official Snakemake's documentation. You will also find detailed information about the exercises for each section, as well as hints for the difficult parts.

All information in the current version of this wiki is based on the official documentation for Snakemake version 5.7.4.

Direct links to exercises sessions:

• Series 1
• Series 2

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Upcoming sessions:

• University of Lausanne, Nov. 11th 2019 (registration closed)
• PyPharma 2019 conference, Basel, Nov. 21st 2019 (registration closed)