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Welcome to the official wiki for the virtual workshop Snakemake for reproducible analyses which is taking place at UNIL on October 14th 2021.

In this wiki, you will find all the information presented during the workshop, sometimes with additional details and references to the official Snakemake's documentation. You will also find detailed information about the exercises for each section, as well as hints for the difficult parts.

All information in the current version of this wiki is based on the official documentation for Snakemake version 6.9.1.

Direct links to exercises:

• Guidelines
• Series 1
• Series 2