metagenome-code

All custom R scripts used for data preprocessing, statistical analysis (including PCA, OPLS-DA, permutation tests, and cross-validation)

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
DADA2.R		DADA2.R
PCoA.R		PCoA.R
README.md		README.md
aldex2.R		aldex2.R
bracken.sh		bracken.sh
bwa.sh		bwa.sh
cat_phylum.R		cat_phylum.R
cd-hit.sh		cd-hit.sh
count_genes.sh		count_genes.sh
cp_contig_seq.sh		cp_contig_seq.sh
filter_500bp.sh		filter_500bp.sh
kegg.py		kegg.py
kegg.sh		kegg.sh
kraken2.sh		kraken2.sh
mantel_spearman.R		mantel_spearman.R
marge_counts.py		marge_counts.py
megahit.sh		megahit.sh
metaphlan.sh		metaphlan.sh
mutiVolcano_log2FC0.5.R		mutiVolcano_log2FC0.5.R
opls-ds2-CK_Mcor.R		opls-ds2-CK_Mcor.R
opls-ds2_CK_Mmic.R		opls-ds2_CK_Mmic.R
opls-ds2_Mcor_Mmic.R		opls-ds2_Mcor_Mmic.R
prodigal.sh		prodigal.sh
venn.R		venn.R
α多样性.R		α多样性.R
β多样性.R		β多样性.R

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