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update COVIDM to NCEM calculation

Status: Open.

#16 In SACEMA/omicronSA;

· pearsonca opened on Jan 18, 2022

switch to odds-factor approach for sero+ sensitivity

scienceitems pertaining to the analytical decisions in the workitems pertaining to the analytical decisions in the work

Status: Open.

#13 In SACEMA/omicronSA;

· pearsonca opened on Dec 17, 2021

region coding - switch to all abbreviations, only use names in plotting / tabling

Status: Open.

#12 In SACEMA/omicronSA;

· pearsonca opened on Dec 11, 2021

rt figures

Status: Open.

#11 In SACEMA/omicronSA;

· pearsonca opened on Dec 6, 2021

figure pipeline organization

Status: Open.

#10 In SACEMA/omicronSA;

· pearsonca opened on Dec 6, 2021

SGTF frequency uncertainty visualization

Status: Open.

#9 In SACEMA/omicronSA;

· pearsonca opened on Dec 6, 2021

Missing figure making steps using <code>thresholds.R</code>

questionFurther information is requestedFurther information is requested

Status: Open.

#7 In SACEMA/omicronSA;

· seabbs opened on Dec 3, 2021

Changing logmean incubation period

questionFurther information is requestedFurther information is requested

Status: Open.

#5 In SACEMA/omicronSA;

· seabbs opened on Dec 3, 2021

fetch reinfections data series

Status: Open.

#2 In SACEMA/omicronSA;

· pearsonca opened on Dec 2, 2021

incorporate SGTF frequency ensembles

Status: Open.

#1 In SACEMA/omicronSA;

· pearsonca opened on Dec 2, 2021