Custom channel layout #41
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How can we input a custom channel layout e.g. for an Axion16 (for 24-well plates)? |
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Replies: 1 comment 11 replies
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Hi, to input a custom channel layout, first, you need to go to the tab under "spike detection" and change the layout to "Custom". Then, go to the script AnalysisPipeline/Functions/getCoordsFromLayout.m, and edit the channel numbering and coordinates after line 149 (you can use the earlier lines for "Axion64" as a reference to how the channel ordering and layout numbers work). When you start running the pipeline, it should also print out the channel layout and numbering for you to double check it is what you wanted. Let me know if you have any issues! |
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Hi it appears that file conversion is not working at all now, file conversion runs without any errors but nothing happens and no converted files are generated. |
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Are you using the GUI to do the file conversion? |
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Yes, with the Axion.raw option. |
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ah that's strange, I just tested it on some axion .raw files (albeit with 60 electrodes) and it ran okay. Perhaps try removing the existing .mat files from the folder with the .raw files? |
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Ok thank you it works! I think I was just testing it with a different file that was too large. |
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Hi, to input a custom channel layout, first, you need to go to the tab under "spike detection" and change the layout to "Custom". Then, go to the script AnalysisPipeline/Functions/getCoordsFromLayout.m, and edit the channel numbering and coordinates after line 149 (you can use the earlier lines for "Axion64" as a reference to how the channel ordering and layout numbers work). When you start running the pipeline, it should also print out the channel layout and numbering for you to double check it is what you wanted. Let me know if you have any issues!