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Paper: A Pragmatic Machine Learning Approach to Quantify Tumor-Infiltrating Lymphocytes in Whole Slide Images (Link)

  1. Install or verify that the following on your system:
  • Docker
  • Nvidia-drivers
  • Nvidia docker
  • CUDA & cuDNN
  1. Build image from sources Run docker build -t hover:1.0 .in Dockerfiles folder.

  2. Make a file structure for mounting to container e.g. </data/input/some_dataset/Images/>, </data/output/infer/> Tree structure example

  3. Modify <launch.sh> script and run it.

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A Pragmatic Machine Learning Approach to Quantify Tumor-Infiltrating Lymphocytes in Whole Slide Images

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  • Dockerfile 86.1%
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