. ├── _quarto.yml # Main configuration ├── README.md # Project overview ├── Makefile # Automation scripts ├── _environment.yml # Conda environment ├── Dockerfile # Reproducible environment ├── _references/ # BibTeX references │ ├── physics.bib │ ├── mathematics.bib │ └── philosophy.bib ├── _data/ # Datasets │ ├── lattice-structures/ │ └── experimental-results/ ├── _scripts/ # Reusable scripts │ ├── plot_utils.py │ └── data_processing.R ├── _manuscripts/ # Long-form content │ ├── quantum-field-theory.qmd │ ├── differential-geometry.qmd │ └── philosophy-of-science.qmd ├── _notebooks/ # Dated research notes │ ├── 2023-10-01-qft-calculations.qmd │ ├── 2023-10-05-topology-notes.qmd │ └── 2023-10-10-philosophy-ideas.qmd ├── _website/ # Website/book structure │ ├── index.qmd # Homepage │ ├── physics/ # Physics section │ │ ├── quantum-mechanics.qmd │ │ ├── electrodynamics.qmd │ │ └── condensed-matter.qmd │ ├── mathematics/ # Mathematics section │ │ ├── algebra.qmd │ │ ├── topology.qmd │ │ └── complex-analysis.qmd │ ├── philosophy/ # Philosophy section │ │ ├── epistemology.qmd │ │ ├── philosophy-of-math.qmd │ │ └── philosophy-of-physics.qmd │ └── _outputs/ # Auto-generated PDFs │ ├── quantum-field-theory.pdf │ └── differential-geometry.pdf └── .github/workflows/ # CI/CD for GitHub Pages └── deploy.yml

Future roadmap

• Dashboards and Shiny Apps