Release v1.6.2

General updates

• The sentieon-cli is now available on PyPI, https://pypi.org/project/sentieon_cli/
• Container images are now automatically pushed to DockerHub, https://hub.docker.com/r/sentieon/sentieon-cli
• Add a dependency on Sentieon's vcflib and replace sentieon pyexec with sys.executable
• Improve pipeline input validation
• Improve error reporting during input validation
• Updates and improvements to the Dockerfile

Sentieon Pangenome

• Improve runtime with BAM/CRAM input through replacement of samtools merge with Sentieon's ReadWriter
• Improve sharded error reporting
• Additional functionality
  • Ploidy and sex estimation
  • STR expansion detection with ExpansionHunter
  • HLA and KIR typing with t1k
  • Handling of medically relevant genes inside of large segmental duplications with segdup-caller