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Make the main function handle broken pipes and cleanup; fixes for pipe handling for igblast context manager and subprocess
This reaches back out from the unit testing to run a bash script to check this behavior. Not sure if this would scale reasonably if there are many more of these, but at least it's tested somewhere (and this test currently fails on dev but should pass here)
Handle broken pipes
Add sequence identity subcommand
Support Newick .tree files in show command
Support uppercase file extensions in show command
Make identity command disregard gaps and uppercase/lowercase differences
Default to all available references for a given species for IgBLAST
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0.4.0 - 2022-09-17
Added
igblastcommand (#39)identitycommand for calculating pairwise identity between arbitrary queries and references (#31, #37)showcommand (#33)Fixed
showcommand (#35)igseq something | something else) are now handled gracefully (#30)