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  • UW
  • Seattle, WA

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Popular repositories Loading

  1. sample_code sample_code Public

    Some small code samples for everyday bioinformatics work. No license associated. Feel free to email me with any questions!

    Python

  2. Atlas-link Atlas-link Public

    Atlask-link for superscaffolding. Authors: Jixin Deng and Kim C. Worley (Not ready for release)

    Perl

  3. kmer-spectrum-analysis kmer-spectrum-analysis Public

    kmer plots and analysis to estimate genome size, percent repeat

    Python 1

  4. DASVC DASVC Public

    Forked from zeeev/DASVC

    De-novo Assembly Structural Variant Caller

    C++

  5. validator validator Public

    Forked from modENCODE-DCC/validator

    Perl

  6. check_boundary_verlap check_boundary_verlap Public

    Quick and dirty: takes a bedfile, checks the percent overlap of boundaries with another feature bedfile (like repeats, segDups) and reportsi t

    Python