Replicate turtle CI/CD

.github/workflow_scripts/setup_conda_environment.sh

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+#!/bin/bash
+
+# Ensure the script fails on error
+set -e
+
+# Variables (Consider passing these as arguments to the script instead of hardcoding)
+CONDA_ENV_NAME=gnn
+PYTHON_VERSION=3.8
+
+echo "Initializing environment and installing dependencies"
+
+if [ ! -d "$HOME/miniconda" ]; then
+  echo "Miniconda not found, installing..."
+  wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O $HOME/miniconda.sh
+  bash $HOME/miniconda.sh -b -p $HOME/miniconda
+else
+  echo "Miniconda already installed"
+fi
+
+# Initialize conda in script
+source $HOME/miniconda/etc/profile.d/conda.sh
+conda init bash
+
+# Create the conda environment
+conda create -y -c conda-forge --name ${CONDA_ENV_NAME} python=${PYTHON_VERSION} pip-tools
+
+# Reactivate conda.sh to ensure the conda activate command works
+source $HOME/miniconda/etc/profile.d/conda.sh
+conda activate ${CONDA_ENV_NAME}
+
+echo "${CONDA_ENV_NAME} environment is ready and activated."

.github/workflows/build-base-docker-images.yml

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+name: build-base-docker-images
+
+on:
+  issue_comment:
+    types: [created]
+
+jobs:
+  build-docker-images:
+    permissions:
+      contents: 'read'
+      id-token: 'write'
+    runs-on: ubuntu-latest
+    env:
+      TAG: ${{ github.run_number}}
+    if: contains(github.event.comment.body, '/build_base_docker_images')
+    steps:
+        - name: Checkout repository
+          uses: actions/checkout@v3
+
+        - name: Google Cloud Auth
+          uses: 'google-github-actions/auth@v2'
+          with:
+            project_id: ${{ secrets.GCP_PROJECT_ID }}
+            workload_identity_provider: ${{ secrets.WIF_PROVIDER }}
+            service_account: ${{ secrets.GCP_SERVICE_ACCOUNT_EMAIL }}
+
+        - name: Set Up Cloud SDK
+          uses: google-github-actions/setup-gcloud@v2
+          with:
+            project_id: ${{ secrets.GCP_PROJECT_ID }}
+
+        - name: Build and Push Docker Images
+          run: |
+            gcloud auth configure-docker us-central1-docker.pkg.dev
+            docker build -t us-central1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/gigl-base-images/gigl-cpu-base:${TAG} -f containers/Dockerfile.cpu.base .
+            docker push us-central1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/gigl-base-images/gigl-cpu-base:${TAG}
+            docker build -t us-central1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/gigl-base-images/gigl-cuda-base:${TAG} -f containers/Dockerfile.cuda.base .
+            docker push us-central1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/gigl-base-images/gigl-cuda-base:${TAG}

.github/workflows/generate-hashed-requirements.yml

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+name: generate-hashed-requirements
+
+on:
+  issue_comment:
+    types: [created]
+
+jobs:
+  generate-linux-hashed-requirements:
+    runs-on: ubuntu-latest
+    if: contains(github.event.comment.body, '/generate_hashed_requirements')
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.9.18'
+
+      - name: Install pip-tools
+        run: pip install pip-tools
+
+      - name: Generate hashed requirements
+        run: |
+          pip-compile -v --allow-unsafe --generate-hashes --no-emit-index-url --resolver=backtracking \
+          --output-file=requirements/dev_linux_cuda_requirements_unified.txt \
+          ./pyproject.toml
+
+      - name: Upload Artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: dev_linux_cuda_requirements_unified
+          path: requirements/dev_linux_cuda_requirements_unified.txt
+
+  generate-mac-hashed-requirements:
+    runs-on: macos-14
+    if: contains(github.event.comment.body, '/generate_hashed_requirements')
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.9.18'
+
+      - name: Install pip-tools
+        run: pip install pip-tools
+
+      - name: Generate hashed requirements
+        run: |
+          pip-compile -v --allow-unsafe --generate-hashes --no-emit-index-url --resolver=backtracking \
+          --output-file=requirements/dev_darwin_arm64_requirements_unified.txt \
+          ./pyproject.toml
+
+      - name: Upload Artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: dev_darwin_arm64_requirements_unified
+          path: requirements/dev_darwin_arm64_requirements_unified.txt

.github/workflows/integration-tests.yml

@@ -0,0 +1,77 @@
+name: integration_tests
+
+on:
+  issue_comment:
+    types: [created]
+
+jobs:
+  integration_tests:
+    permissions:
+      contents: 'read'
+      id-token: 'write'
+      pull-requests: write
+      statuses: write
+    if: contains(github.event.comment.body, '/integration_tests')
+    runs-on: ubuntu-latest
+    steps:
+        - name: Checkout repository
+          uses: actions/checkout@v3
+
+        - name: Setup Conda Environment
+          run: |
+            ./.github/workflow_scripts/setup_conda_environment.sh
+          shell: bash
+
+        - name: Install Dependencies
+          run: |
+            source $HOME/miniconda/etc/profile.d/conda.sh
+            conda activate gnn
+            make install_dev_deps
+          shell: bash
+
+        - name: Google Cloud Auth
+          uses: 'google-github-actions/auth@v2'
+          with:
+            project_id: ${{ secrets.GCP_PROJECT_ID }}
+            workload_identity_provider: ${{ secrets.WIF_PROVIDER }}
+            service_account: ${{ secrets.GCP_SERVICE_ACCOUNT_EMAIL }}
+
+        - name: Set up Cloud SDK
+          uses: google-github-actions/setup-gcloud@v2
+          with:
+            project_id: ${{ secrets.GCP_PROJECT_ID }}
+
+        - name: Use gcloud CLI
+          run: gcloud info
+
+        - name: Run Integration Tests
+          run: |
+            source $HOME/miniconda/etc/profile.d/conda.sh
+            conda activate gnn
+            make integration_test
+            make integration_e2e_test
+          shell: bash
+
+        - name: Fetch PR details and update commit status
+          uses: actions/github-script@v5
+          if: always()
+          with:
+            github-token: ${{ secrets.GITHUB_TOKEN }}
+            script: |
+              const pullRequest = await github.rest.pulls.get({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                pull_number: context.issue.number
+              });
+
+              const state = '${{ job.status }}';
+
+              github.rest.repos.createCommitStatus({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                sha: pullRequest.data.head.sha,
+                state: state,
+                description: 'The integration tests have completed',
+                context: 'integration-tests'
+              })
+

.github/workflows/release.yml

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+name: release
+
+on:
+    push:
+      tags:
+        - 'v*.*.*'
+
+jobs:
+    build:
+      name: Build distribution 📦
+      runs-on: ubuntu-latest
+      steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+      - name: Install pypa/build
+        run: >-
+            python3 -m
+            pip install
+            build
+            --user
+
+      - name: Build Binary Distribution
+        run: python3 -m build
+
+      - name: Store the distribution packages
+        uses: actions/upload-artifact@v3
+        with:
+            name: python-package-distributions
+            path: dist/
+
+    publish:
+        name: Publish to TestPyPi 🚀
+        if: startsWith(github.ref, 'refs/tags/')
+        runs-on: ubuntu-latest
+        needs: build
+        environment: release
+        permissions:
+          id-token: write
+        steps:
+        - name: Download distribution
+          uses: actions/download-artifact@v3
+          with:
+            name: python-package-distributions
+            path: dist/
+        - name: Publish distribution 📦 to TestPyPI
+          uses: pypa/gh-action-pypi-publish@release/v1
+          with:
+            repository-url: https://test.pypi.org/legacy/

.github/workflows/unit-test.yml

@@ -0,0 +1,32 @@
+name: unit_test
+
+on:
+  pull_request:
+    types: [synchronize, opened, reopened]
+
+jobs:
+  unit-tests:
+    if: github.event_name == 'pull_request'
+    runs-on: ubuntu-latest
+    steps:
+        - name: Checkout repository
+          uses: actions/checkout@v3
+
+        - name: Setup Conda Environment
+          run: |
+            ./.github/workflow_scripts/setup_conda_environment.sh
+          shell: bash
+
+        - name: Install Dependencies
+          run: |
+            source $HOME/miniconda/etc/profile.d/conda.sh
+            conda activate gnn
+            make install_dev_deps
+          shell: bash
+
+        - name: Run Unit Tests
+          run: |
+            source $HOME/miniconda/etc/profile.d/conda.sh
+            conda activate gnn
+            make unit_test
+          shell: bash