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StatFunGen / pecotmr Public

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Fork 22
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Fix variant id harmonization and NA handling in summary stats and LD#413

Merged

danielnachun merged 10 commits intoStatFunGen:mainStatFunGen/pecotmr:mainfrom

kal26:mainkal26/pecotmr:mainCopy head branch name to clipboard

Nov 6, 2025

Conversation Commits10 (10)Checks Files changed

Merged

Fix variant id harmonization and NA handling in summary stats and LD#413
danielnachun merged 10 commits intoStatFunGen:mainfrom
kal26:main

Commits

Commits on Oct 2, 2025

clean NAs before mutated in alelle_qc
kal26
committed
clean build from LD varaint ids
kal26
committed
add missing defualt for pip_cutoff_to_skip_ld
kal26
committed
chr anming for LD columns
kal26
committed
chr naming for LD columns
kal26
committed
chr and build naming in LD variant ids
kal26
committed
harmonize LD block variants, handel nas in printing
kal26
committed
harmonize all to have chr prefix
kal26
committed
remove nas from sumstats
kal26
committed
Update documentation
kal26
committed

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