- Plots scaffolds sorted by size
- Provides and visualises basic assembly statistics (N50, N90, etc)
- Calculates and plots scaffold GC content
- Calculates and plots N content
- Integrates optional BUSCO scores
- Can integrate kmer completeness value
- Correctly differentiates between contigs and scaffolds
A python program to generate blobtoolkit "snail plots". Simply call on the fasta file of your assembly and generate a snail in seconds!
I created this to streamline the process of generating a snailplot. Currently, you have to use a perl script to generate summary statistics, then set up an HTTP server to load the interactive plot. This merges the two steps and generates a static plot suitable for quick exploration, or publication.
Currently a very early version!
