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SysBioChalmers / RAVEN Public

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Eduard Kerkhoven edited this page Feb 2, 2018 · 13 revisions

Welcome to the RAVEN wiki!

Wiki pages Pages 11

Home
Based on KEGG Organism Code
de novo Generate HMMs
Development policy
External Databases
Installation
KEGG Update in RAVEN
KnownIssues
RAVEN Model Structure
Tutorials
Use Pre Trained HMMs

Introduction
Installation
- Solvers
- Uninstall
External Databases
Getting Started
- Tutorials
- RAVEN Model Structure
Model Reconstruction from KEGG
- Option 1: Based on KEGG Organism Code
- Option 2: Based on Homology Search Against KEGG Orthology Specific HMMs
  - Option 2-a: Use Pre-Trained HMMs
  - Option 2-b: de novo Generate HMMs
Development Policy
Known Issues
Developer Protocols
- KEGG Update in RAVEN

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